Locus 2463

Sequence ID 2R_DroMel_CAF1
Location 8,841,437 – 8,841,553
Length 116
Max. P 0.528716
window4066

overview

Window 6

Location 8,841,437 – 8,841,553
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.00
Mean single sequence MFE -14.92
Consensus MFE -12.78
Energy contribution -12.60
Covariance contribution -0.19
Combinations/Pair 1.07
Mean z-score -1.37
Structure conservation index 0.86
SVM decision value -0.01
SVM RNA-class probability 0.528716
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8841437 116 + 20766785
UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCGCUGCAAAAGGUUAUCCUUGCCACAUACCAACACACAC----ACACACACAGCUCAGAACUCACAACUC
...........(((.((((.........((((......(((((....))))).)))).((((....)))))))).)))...........----........................... ( -13.80)
>DroSim_CAF1 85449 114 + 1
UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCGCUGCAAAAGGUUAUCCUUGCCGCACACCAACACACA------CACACACAGCUCAGAACUCACAACUC
...............(((((........(((((....)))))......((.((.(((..(((....)))))).)).))..........------.......))).))............. ( -15.10)
>DroEre_CAF1 88095 94 + 1
UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCACUGCAAAAGGUUAUCCUUGCCGCACACCAACACACAC--------------------------AACUC
................(((.........((((......(((((....))))).)))).((((....)))))))................--------------------------..... ( -13.20)
>DroYak_CAF1 89133 120 + 1
UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCUCUGCAAAAGGUUAUCCUUGCCGCACACCAACACACACGAGCACACACACAGCUCACAACUUGCAACUC
............................(((((......((((....))))..(((..((((....))))...))).............((((.........)))).....))))).... ( -17.60)
>consensus
UCUUAUUUAUUUAUAUGGCUUAUUUACCUGCAACAAUUUGCAUACUAAUGCGCUGCAAAAGGUUAUCCUUGCCGCACACCAACACACAC_____CACACACAGCUCAGAACUCACAACUC
...............((((......((((((((....)))).......(((...)))..)))).......)))).............................................. (-12.78 = -12.60 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:38 2006