| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,840,894 – 8,840,991 |
| Length | 97 |
| Max. P | 0.912801 |
| Location | 8,840,894 – 8,840,991 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 83.69 |
| Mean single sequence MFE | -22.35 |
| Consensus MFE | -19.49 |
| Energy contribution | -19.55 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.912801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8840894 97 - 20766785 CCAUAUAUACAUAUGUAUAUGGCCAUUAAGGAUCAAUUUUUGGGCCAUAGGCUAAUGGCUGUAAUUAAAAUAUAUUAGUUAAGCGGCCUUUAUCUCG .(((((....)))))..(((((((...(((......)))...)))))))((.(((.((((((((((((......))))))..)))))).))).)).. ( -23.30) >DroSec_CAF1 85744 93 - 1 CCAUAUA----UAUGUAUAUGGCCAUUAAGGAUCAAUUUUUGGGCCAUAGGCUAAUGGCUGUAAUUAAAAUAUAUUAGUUGAGCGGCCUUUAUCUCG .......----...((.(((((((...(((......)))...))))))).))(((.((((((((((((......))))))..)))))).)))..... ( -22.80) >DroEre_CAF1 87578 86 - 1 CCAC----------AUAUAUGGCUAUAACGGAUCAAUUUGUGGGCCAUAGGCUAAUGGCUGUAAUUAAAAUAUAUUAGUGGAGCGGCCU-UAUUUCG ....----------...(((((((...(((((....))))).))))))).......((((((.(((((......)))))...)))))).-....... ( -22.10) >DroYak_CAF1 88627 87 - 1 UAUA----------GUAUAUGGCCAUUAAGGAUCAAGUUUUAGGCCAUAGGCUAAUGGCUAUAAUUAAAAUAUAUUAGUUGAGAGGCCUUUACCUCG ..((----------((.(((((((..(((((......)))))))))))).)))).......(((((((......))))))).((((......)))). ( -21.20) >consensus CCAU__________GUAUAUGGCCAUUAAGGAUCAAUUUUUGGGCCAUAGGCUAAUGGCUGUAAUUAAAAUAUAUUAGUUGAGCGGCCUUUAUCUCG .................(((((((...(((((....))))).)))))))((.(((.((((((((((((......))))))..)))))).)))))... (-19.49 = -19.55 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:38 2006