| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,837,601 – 8,837,716 |
| Length | 115 |
| Max. P | 0.949218 |
| Location | 8,837,601 – 8,837,716 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 73.23 |
| Mean single sequence MFE | -36.53 |
| Consensus MFE | -22.91 |
| Energy contribution | -22.97 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.949218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8837601 115 - 20766785 GGCACAGCCAAACGGCAAACUUUAA-AGGGGUUUGUCGACGGCUUUUGUUGGGGUUUUACAAAGGGGGCUACAAAGGGGGUUUACAAAAAGGGUGGCGGGUCACUG--GGCUGUUGUG .((((((((...((((((((((...-..))))))))))..((((((..(((..(((((......)))))..)))..)))))).........(((((....))))).--))))).))). ( -36.60) >DroSec_CAF1 82438 115 - 1 GGCACAGCCAAACGGCAAACUUUAA-AGGGGUUUGUCGACGGCUUUUGUUGGGGUUUUACAAAAGGGGCUACAAAGGGGGUUUACAAAGGGGGUGGCGGUUGACUG--GGCUGUUGUG .((((((((...((((((((((...-..)))))))))).((((((((((.........)))))))..(((((......(.....).......)))))......)))--))))).))). ( -36.02) >DroEre_CAF1 84380 99 - 1 GGCACAGCCGCACGGCAAACUUUAA-AGGGGUUUUCC---CCCUUUUGUUGGCGUUUUACAAAGGGG------------GCUUACAAAAGGGG---CGGGCGACUGGGGGCUGUUGUG .((((((((.(..((.((((((...-..)))))).))---(((((((((.(((.((((....)))).------------))).))))))))).---(((....)))).))))).))). ( -39.70) >DroAna_CAF1 82980 100 - 1 GGCAGAGCCAAACGGCAAACUUUAAAAGGGGUUUGUUGAAGGCUUUUGUUGGGAUUCCAAGUGAGGGG--------GGGGAUGCCA----GGCUGCCAGG----GG--GGUUGUUGUG (((((((((...(((((((((((....)))))))))))..))))....((((.(((((..........--------.))))).)))----).)))))...----..--.......... ( -33.80) >consensus GGCACAGCCAAACGGCAAACUUUAA_AGGGGUUUGUCGACGGCUUUUGUUGGGGUUUUACAAAAGGGG________GGGGUUUACAAAAGGGGUGGCGGGUGACUG__GGCUGUUGUG .((((((((...(((((((((((....)))))))))))....(((((((.........)))))))...........................................))))).))). (-22.91 = -22.97 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:34 2006