Locus 2459

Sequence ID 2R_DroMel_CAF1
Location 8,837,279 – 8,837,371
Length 92
Max. P 0.732022
window4060

overview

Window 0

Location 8,837,279 – 8,837,371
Length 92
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 73.77
Mean single sequence MFE -15.14
Consensus MFE -3.03
Energy contribution -5.19
Covariance contribution 2.16
Combinations/Pair 1.06
Mean z-score -1.69
Structure conservation index 0.20
SVM decision value 0.43
SVM RNA-class probability 0.732022
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8837279 92 + 20766785
ACAUACAUAU----A--------UGUACAUAUCGAAGUUAUGUGGGGACACAUAAAACAUCCAACCGCAAAACAUAUUAAAUUUAUUAUCAAUAAAUUUUCAUU
(((((....)----)--------))).......(((.(((((((....)))))))........................(((((((.....))))))))))... ( -13.40)
>DroPse_CAF1 92684 77 + 1
GAG----UAU----G--------UGUU------GGG-----GGGUGGGCACAUAAAACAUGCAACCACAAAACAUAUUACAUUUAUUAUCAAUAAAUUUUCAUU
.((----(((----(--------(.((------(..-----.(((..(((.........))).))).))).))))))).......................... ( -13.60)
>DroEre_CAF1 84109 98 + 1
ACAUACAGAUGUACAUGCCAAAUCGUA------GAAGUUAUGUGGGGACACAUAAAACAUCCAACCGCAAAACAUAUUAAAUUUAUUAUCAAUAAAUUUUCAUU
.......(((((...(((......)))------....(((((((....))))))).))))).................((((((((.....))))))))..... ( -15.90)
>DroYak_CAF1 85082 94 + 1
AUGU----AUGUAUACGACUAUAGGUU------GAAGUUAUGUGGGGACACAUAAAACAUCCAACCGCAAAACAUAUUAAAUUUAUUAUCAAUAAAUUUUCAUU
..((----(((((((....))).((((------(...(((((((....)))))))......))))).....)))))).((((((((.....))))))))..... ( -19.20)
>DroPer_CAF1 95764 77 + 1
GAG----UAU----G--------UGUU------GGG-----GGGUGGGCACAUAAAACAUGCAACCACAAAACAUAUUACAUUUAUUAUCAAUAAAUUUUCAUU
.((----(((----(--------(.((------(..-----.(((..(((.........))).))).))).))))))).......................... ( -13.60)
>consensus
AAGU___UAU____A________UGUU______GAAGUUAUGUGGGGACACAUAAAACAUCCAACCGCAAAACAUAUUAAAUUUAUUAUCAAUAAAUUUUCAUU
........................((...........(((((((....)))))))...........))..........((((((((.....))))))))..... ( -3.03 =  -5.19 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:33 2006