Locus 2455

Sequence ID 2R_DroMel_CAF1
Location 8,825,751 – 8,825,849
Length 98
Max. P 0.603297
window4055

overview

Window 5

Location 8,825,751 – 8,825,849
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 88.44
Mean single sequence MFE -19.23
Consensus MFE -17.70
Energy contribution -18.03
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.92
SVM decision value 0.14
SVM RNA-class probability 0.603297
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8825751 98 + 20766785
GUCCUACUUAUUCAAAUAUCUCUCAUAUUCUUCAAGUAUUAUUUAGAGGUUUUGUGCGGUUUUUGGAAACGAGAACGCACUGCAAUCCACCUUUAGAA
....(((((.....(((((.....)))))....)))))...(((((((((...(((((.((((((....)))))))))))........))))))))). ( -23.30)
>DroSec_CAF1 70593 98 + 1
GUCCUACUUAUUCAAAUAUCUCUCAGAUUCUUCAAAUAUUUUUUAGAGGUUUUGUGCGGUUUUUGGAAUCGAGAACGCACUGCAAUCCACCUUUAGAA
........................................((((((((((...(((((.((((((....)))))))))))........)))))))))) ( -17.80)
>DroSim_CAF1 72954 94 + 1
GCCAUACUUUU----AUAUCUCUCAUACCCUUCAAAUUUGUUUUAGAGAUUUUCUGCGGUUUUUGGAAACGAGAACGCACUGCAAUCCACCUUUAGAA
((.........----..((((((...((...........))...))))))....((((.((((((....))))))))))..))............... ( -16.60)
>consensus
GUCCUACUUAUUCAAAUAUCUCUCAUAUUCUUCAAAUAUUUUUUAGAGGUUUUGUGCGGUUUUUGGAAACGAGAACGCACUGCAAUCCACCUUUAGAA
.........................................(((((((((....(((((((((((....)))))....))))))....))))))))). (-17.70 = -18.03 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:28 2006