Locus 2454

Sequence ID 2R_DroMel_CAF1
Location 8,824,567 – 8,824,660
Length 93
Max. P 0.531787
window4054

overview

Window 4

Location 8,824,567 – 8,824,660
Length 93
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -22.44
Consensus MFE -8.95
Energy contribution -9.07
Covariance contribution 0.11
Combinations/Pair 1.17
Mean z-score -2.67
Structure conservation index 0.40
SVM decision value -0.00
SVM RNA-class probability 0.531787
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8824567 93 - 20766785
AAUAA--AAUAAACAAACAAGAC----------UGGGGCGAAUUGAAAAAACUUUUAAUCUCUGUCUCCAAGCGGAAACACACAGCUCAGUGCUGAUUUUCCAGA
.....--.............(..----------(((((((((((((((....))))))).)).))).)))..)(((((....((((.....))))..)))))... ( -19.10)
>DroPse_CAF1 77491 96 - 1
----G--UCUAAGCAAACAAAACGCUUUGUCGCAGGGGAAAAUUGAAA-AA-UUUUAAUCUCUGUCGCAAAGCGGAAACACGCAGCUCAGCGAC-AGCAUCCAGC
----.--.....((........((((((((.(((((((((((((....-))-))))..))))))).))))))))......(((......)))..-.))....... ( -30.50)
>DroSec_CAF1 69409 88 - 1
----A--AAUAAACAAACAAGAC----------UGAGGCGAAUUGAAAAAA-UUUUAAUCUCUGUCGCCAAGCGGAAACACACAGCUCAGCGCUGAUUUUCCAGA
----.--...............(----------((.(((((...((.....-........))..)))))..(.(....).).((((.....))))......))). ( -17.62)
>DroSim_CAF1 71776 92 - 1
AAUAA--AAUAAACAAACAAGAC----------UGGGGCGAAUUGAAAAAA-UUUUAAUCUCUGUCGCCAAGCGGAAACACACAGCUCAGCGCUGAUUUUCCAGA
.....--...............(----------((((((((...((.....-........))..)))))..(.(....).).((((.....)))).....)))). ( -20.72)
>DroEre_CAF1 71790 91 - 1
CAACA--AACAAACAAACAAGAC----------AGAGGAGAAUUGAAA-AA-UUUUAAUCUCUGUCGCCAAGCGGAAACACACAGCUCAGUGCUGAUGCCUCGGA
.....--.............(((----------(((((((((((....-))-))))..)))))))).((..(((....)...((((.....))))..))...)). ( -25.20)
>DroYak_CAF1 72172 94 - 1
CAACAACAACAAACAAACAAGAC----------GGAGGCGAAUUGAAAAAA-UUGUAAUCUCUGUCGCCAAGCGGAAACACACAGCGCAGUGCUGAUUGCUCAGA
....................(((----------((((((((.((....)).-))))...)))))))....((((....)...((((.....))))...))).... ( -21.50)
>consensus
_A__A__AAUAAACAAACAAGAC__________UGAGGCGAAUUGAAAAAA_UUUUAAUCUCUGUCGCCAAGCGGAAACACACAGCUCAGCGCUGAUUUUCCAGA
..................................(((.......................(((((......)))))......((((.....))))....)))... ( -8.95 =  -9.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:27 2006