Locus 2450

Sequence ID 2R_DroMel_CAF1
Location 8,821,901 – 8,822,020
Length 119
Max. P 0.683742
window4049 window4050

overview

Window 9

Location 8,821,901 – 8,822,002
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.53
Mean single sequence MFE -23.07
Consensus MFE -15.25
Energy contribution -14.70
Covariance contribution -0.55
Combinations/Pair 1.18
Mean z-score -1.60
Structure conservation index 0.66
SVM decision value 0.31
SVM RNA-class probability 0.683742
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8821901 101 + 20766785
-----ACUGG-----AAACG--AGCGA-----GUCGCGC-UGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCCAUAUUGUGCA-CGG
-----.((((-----(((((--((((.-----....)))-).))))))((((((((((....)))))))))).......((((((.((.((((.......))))..)).)))))).-))) ( -24.90)
>DroPse_CAF1 74785 106 + 1
-----CCGAA-----AAAUG--AGCGAAGAACGGAGAGC-AACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGCGCA-UAA
-----.....-----..(((--.((((((((((......-..))))((((((((((((....)))))))))))))))).((...(((((((....))))))).))......)).))-).. ( -21.50)
>DroGri_CAF1 77741 106 + 1
GCAGGCAGUC-----AAAUG--AGCGA-----ACUGUGCGAAGGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUUAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGUG-UG-
(((.(((((.-----..(((--.((..-----...((((...((..((((((((((((....))))))))))))..)).))))((((((((....)))))))))))))))))).))-).- ( -27.80)
>DroWil_CAF1 98712 105 + 1
-----CUGAA-----AAGUAGAAGCAAA----AAUGAGC-AGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGCAGCUA
-----.....-----...(((..(((..----.(((.((-.((...((((((((((((....)))))))))))).....))...(((((((....))))))).)))))....)))..))) ( -21.50)
>DroAna_CAF1 66459 106 + 1
-----CCUGGCCCCCAAAUG--AGUGA-----GUCGAGG-AACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCAAUAUUGUGCA-CUG
-----((((((.(.(.....--.).).-----))).)))-...(..((((((((((((....))))))))))))...).((((((.(((((((.......)))).))).)))))).-... ( -22.00)
>DroPer_CAF1 75534 106 + 1
-----CCGGA-----AAAUG--AGCGAAGAACGGAGAGC-AACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGCA-UAA
-----.((.(-----(.(((--.((.(((((((......-..))))((((((((((((....))))))))))))(((((.((........)).))))).))).))))).)).))..-... ( -20.70)
>consensus
_____CCGGA_____AAAUG__AGCGA_____GGAGAGC_AACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGCA_CAA
.......................(((....................((((((((((((....))))))))))))(((((.((........)).)))))..............)))..... (-15.25 = -14.70 +  -0.55)

alignment

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secondary structure

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dotplot

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Window 0

Location 8,821,923 – 8,822,020
Length 97
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.50
Mean single sequence MFE -19.70
Consensus MFE -12.66
Energy contribution -12.30
Covariance contribution -0.36
Combinations/Pair 1.09
Mean z-score -1.39
Structure conservation index 0.64
SVM decision value 0.21
SVM RNA-class probability 0.633435
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8821923 97 + 20766785
UGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUCAGCCAUAUUGUGCA-CGGUGCUCU-UCUGAAGACAGC----
..(((.((((((((((((....)))))))))))).....((((((.((.((((.......))))..)).)))))))-))((..((.-...))..))...---- ( -17.80)
>DroPse_CAF1 74812 101 + 1
AACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGCGCA-UAAGACUCU-CUUGGAGACAGGAUCU
..(((.((((((((((((....)))))))))))).....((...(((((((....))))))).))......)))..-........(-((((....)))))... ( -21.20)
>DroGri_CAF1 77769 91 + 1
AAGGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUUAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGUG-UG-------CCACGAAGCAUUC----
..((..((((((((((((....))))))))))))..)).((...(((((((....)))))))((((((.....)))-.)-------)).....))....---- ( -21.60)
>DroWil_CAF1 98737 87 + 1
AGCGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGCAGCUACGUUUU-G---------------
((((..((((((((((((....))))))))))))...).((((((((((((....))))))........)))))).))).......-.--------------- ( -17.00)
>DroMoj_CAF1 81643 91 + 1
CCGGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUUAGCAUUAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGUG-UG-------CCACGAAGCAUGC----
..((..((((((((((((....))))))))))))..)).((...(((((((....)))))))((((((.....)))-.)-------)).....))....---- ( -19.20)
>DroPer_CAF1 75561 101 + 1
AACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGCA-UAAGACUCU-CUUGGAGACAGGAUCU
...(((((((((((((((....)))))))))........((((((((((((....))))))........)))))).-))))))..(-((((....)))))... ( -21.40)
>consensus
AACGUUUUAAUAAAUUUGUAAACAGAUUUGUUAAUUUCAGCAUAAAAUUUUGAUGAGAAUUUGGCCAUAUUGUGCA_UGA__CUCU_CAUGAAGACAGC____
......((((((((((((....))))))))))))(((((.((........)).))))).....(((.....).))............................ (-12.66 = -12.30 +  -0.36)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:23 2006