| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,809,713 – 8,809,805 |
| Length | 92 |
| Max. P | 0.531423 |
| Location | 8,809,713 – 8,809,805 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.01 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -16.10 |
| Energy contribution | -15.44 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531423 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8809713 92 - 20766785 ----UUUACUUCUG-GUGGCUUGCAGC-AAAUGGAUGACUCUCGAGAAAUAUAAAUCACUGCUCUCGAGCUAGAAAUGCAGGAAGUAUCUUCUUUUUA---------------- ----..(((((((.-...((.....))-...((.((..(((((((((...............)))))))..))..)).)))))))))...........---------------- ( -18.26) >DroPse_CAF1 61750 114 - 1 GUAUAAUGCAUCUGUGCAGCCUUUAGCUGGAUGAAUGACGCUGGAAGAAUAUAAAUCAUACCUCUUUAGUUGACCAUUCAGGAAGUAUCUGAUUCUAAGGCCGCGUACACUUAU ((((..((((....))))(((((...(((((((..((((....(((((.(((.....)))..))))).))))..)))))))(((........))).)))))...))))...... ( -23.50) >DroSec_CAF1 54218 92 - 1 ----UUUACUUCUG-GGGGCUUCCAGC-AAAUGGAUGACUCUCGAGAAAUAUAAAUCACUGCUCUCGAGCUAGAAAUGCAGGAAGUAUCUUCUUUUUA---------------- ----..((((((((-(((((.((((..-...)))).).))))))..............((((..((......))...))))))))))...........---------------- ( -22.90) >DroSim_CAF1 55329 92 - 1 ----UUUACUUCUG-GGGGCUUCCAGC-AAAUGGAUGACUCUCGAGAAAUAUAAAUCACUGCUCUCGAGCUAGAAAUGCAGGAAGUAUCUUCUUUUUA---------------- ----..((((((((-(((((.((((..-...)))).).))))))..............((((..((......))...))))))))))...........---------------- ( -22.90) >DroEre_CAF1 57053 96 - 1 GCCUUUUGCUUCUG-GGGGCUUCCAGC-AAAUGGACGGCUCUCGAGAGAUAUAAAUCAGUGCUCUCGAGCUGGAAAUGCAGGAAGUAUCUUCUUUUUA---------------- ((.(((((((((..-((((((((((..-...)))).)))))(((((((.(((......)))))))))).)..)))..)))))).))............---------------- ( -31.40) >DroYak_CAF1 57082 95 - 1 GCCGUU-GCUUUCU-GGGGCUUCCAGC-AAAUGGACGACUCUCGAGAGAUAUAAAUCAGUGCUCUCGAGCUAGAAAUGCAGGAAGUAUCUUCUUUUUA---------------- .....(-(((((((-(((((.((((..-...)))).).))((((((((.(((......)))))))))))))))))).)))(((((...))))).....---------------- ( -28.80) >consensus ____UUUACUUCUG_GGGGCUUCCAGC_AAAUGGAUGACUCUCGAGAAAUAUAAAUCACUGCUCUCGAGCUAGAAAUGCAGGAAGUAUCUUCUUUUUA________________ ......(((((((..(((.(.((((......)))).).)))((((((...............))))))............)))))))........................... (-16.10 = -15.44 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:19 2006