Locus 2442

Sequence ID 2R_DroMel_CAF1
Location 8,796,891 – 8,796,997
Length 106
Max. P 0.720412
window4038

overview

Window 8

Location 8,796,891 – 8,796,997
Length 106
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 79.70
Mean single sequence MFE -31.35
Consensus MFE -20.05
Energy contribution -21.55
Covariance contribution 1.50
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.64
SVM decision value 0.40
SVM RNA-class probability 0.720412
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8796891 106 - 20766785
GGGGAUGGUUGGGUGGCCAUCGGUUGUUUUUUUUUUUUUUGGAUUGGCUUCCAAUCCACUGAGUCCGAAUCCAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU
...(((((((....)))))))(((((((...........((((((((...)))))))).((((((.((..(....)..)))))))).....)))))))........ ( -33.80)
>DroSec_CAF1 41283 96 - 1
UGGGAUGGUUAUGUUGGCUUCGCUUGGU----------CUGGGUUGGCUUCCAAUCCACUGAGUCCGAAACGAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU
...........(((((((((((.(((..----------.((((((((...)))))))).((((((.((..(....)..))))))))))).))).)))))))).... ( -34.00)
>DroSim_CAF1 42508 96 - 1
UGGGACGGUUAUGUUGGCUUCGCUUGGU----------CUGGGUUGGCUUCCAAUCCACUGAGUCCGAAACGAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU
...........(((((((((((.(((..----------.((((((((...)))))))).((((((.((..(....)..))))))))))).))).)))))))).... ( -34.00)
>DroYak_CAF1 44280 82 - 1
CGGGAUAGUU--------------UGGG----------UUGGUUUGGGUUCCAAUCCACUGAGUCCGAGACCAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU
..((.(((((--------------((((----------((((........)))))))).((((((.(((.((...))))))))))).)))))....))........ ( -23.60)
>consensus
UGGGAUGGUUAUGUUGGCUUCGCUUGGU__________CUGGGUUGGCUUCCAAUCCACUGAGUCCGAAACCAAAGGCUCGAUUCACAACUGACAGCCAACGAAUU
..((...((((.((((.......................((((((((...)))))))).((((((.((..(....)..))))))))))))))))..))........ (-20.05 = -21.55 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:12 2006