Locus 244

Sequence ID 2R_DroMel_CAF1
Location 1,629,633 – 1,629,727
Length 94
Max. P 0.835967
window524

overview

Window 4

Location 1,629,633 – 1,629,727
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.84
Mean single sequence MFE -37.42
Consensus MFE -20.48
Energy contribution -20.65
Covariance contribution 0.17
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.55
SVM decision value 0.73
SVM RNA-class probability 0.835967
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1629633 94 + 20766785
----CACGCUGCGGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAACUCA-GCAAC---------------------GAGCGUUGCAUCAGCAGCAGCGGCUUCGGAAGGGCA
----..(((((((((..(..((((.....((.....)).....))))..)...))).-(((((---------------------....))))).......))))))(((.(....)))). ( -33.10)
>DroPse_CAF1 40616 116 + 1
CUCGUUCGCUGCGGGGAGGCCCUAAAUAUAGAACAACUUGAGGUAGGUUCGAAAUCGAGCCGCGCUGCAGUCCCGCUUCAGCUCCCGGGCUGCAGCAACAGCAGCAGCAA----CAGCCA
...(((.((((((((....)))................((..((.((((((....))))))..((((((((((.((....))....)))))))))).))..)))))))))----)..... ( -47.30)
>DroSec_CAF1 15528 94 + 1
----CACGCUGCGGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAGCUCA-GCAAC---------------------GAGCGUUGCAUCAGCAGCAGCAGCCUCGGAAGGGCA
----...((((((((....)))........((((.((.....))..))))..(((..-(((((---------------------....)))))...))).))))).(((.(....)))). ( -35.10)
>DroSim_CAF1 13965 94 + 1
----CACGCUGCGGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAGCUCA-GCAAC---------------------GAGCGUUGCAUCAGCAGCAGCAGCCUCGGAAGGGCA
----...((((((((....)))........((((.((.....))..))))..(((..-(((((---------------------....)))))...))).))))).(((.(....)))). ( -35.10)
>DroEre_CAF1 18009 91 + 1
----CUCGCUGCAGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAGCUCA-ACAAC---------------------GAGCGUUGCAUCAGCAGC---AGCCUCGGAAAGGCA
----...(((.....(((((..........((((.((.....))..))))..((((.-.....---------------------))))(((((....)))))---.))))).....))). ( -29.20)
>DroPer_CAF1 35154 116 + 1
CUCGUUCGCUGCGGGGAGGCCCUAAAUAUAGAACAACUUGAGGUAGGUUCGAAAUCGAGCUGCGCUGCAGUCCCGCUUCAGCUCCCGGGCUGCAGCAACAGCAGCAGCAA----CAGCCA
...(((.((((((((....)))................((..((.((((((....))))))..((((((((((.((....))....)))))))))).))..)))))))))----)..... ( -44.70)
>consensus
____CACGCUGCGGGGAGGCCCUAAAUAUAGAACGACUUGAGGUAGGUUCGAACUCA_GCAAC_____________________GAGCGUUGCAUCAGCAGCAGCAGCCUCGGAAAGGCA
.......(((((((((...)))).......((((.((.....))..))))......................................(((((....))))).)))))............ (-20.48 = -20.65 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:21 2006