Locus 2437

Sequence ID 2R_DroMel_CAF1
Location 8,763,314 – 8,763,420
Length 106
Max. P 0.685487
window4032

overview

Window 2

Location 8,763,314 – 8,763,420
Length 106
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 84.29
Mean single sequence MFE -42.34
Consensus MFE -34.50
Energy contribution -34.53
Covariance contribution 0.03
Combinations/Pair 1.18
Mean z-score -1.79
Structure conservation index 0.81
SVM decision value 0.32
SVM RNA-class probability 0.685487
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8763314 106 + 20766785
CUGGCCAGACCAUUGUGGGUCUGCAGGCCGGUUCCAACAAGGGAGCCACCCAGGCUGGCCAGAACCUCGGCGCUGGCCGCAAGAUCCUGCUCGGCAAGUAAGCG--CC
((((((((.((......((((....))))((((((......)))))).....))))))))))......((((((.((((((......)))..))).....))))--)) ( -51.80)
>DroVir_CAF1 9781 106 + 1
CUGGCCAAACCAUUGUCGGUCUCCAGGCUGGCUCCAACAAGGGCGCCACCCAGGCUGGCCAGAAUAUUGGCGCCGGUCGCAAAAUCUUGCUCGGCAAGUAAAUG--CU
(((((((..((...(((((((....)))))))........(((.....))).)).))))))).........(((((..((((....))))))))).........--.. ( -38.30)
>DroGri_CAF1 10953 104 + 1
CUGGCCAGACCAUCGUCGGCCUGCAGGCCGGUUCCAACAAGGGUGCCACCCAGGCUGGCCAGAAUAUUGGCGCUGGCCGCAAGAUCUUGCUUGGCAAGUAAAUU----
((((((((.((....((((((....)))))).........(((.....))).)))))))))).........(((.(((((((....))))..))).))).....---- ( -44.70)
>DroSec_CAF1 7953 106 + 1
CUGGCCAGACCAUCGUGGGUCUGCAGGCCGGUUCCAACAAUGUAGCCCCACUGGCCGGUCAGAACCUCGGCGCUGUCCGCAAGAUCCUGCUCCGCAAGUACCUU--CC
(((((((((((......)))))...(((((((.................))))))))))))).....(((.((.(..(....)..)..)).)))..........--.. ( -34.83)
>DroWil_CAF1 12535 108 + 1
CUGGCCAGACCAUUGUUGGUCUUCAGGCCGGUUCCAACAAGGGUGCCACCCAGGCUGGUCAGAACUUGGGCGCUGGCCGCAAAAUCUUGCUGGGCAAGUAAAUUUGCU
((((((((((((....))))))...))))))..(((.(((((.(((...(((((((.(........).))).))))..)))...))))).)))(((((....))))). ( -42.90)
>DroMoj_CAF1 11454 104 + 1
CUGGCCAGACCAUCGUUGGCCUCCAGGCCGGCUCCAACAAGGGCGCCACCCAGGCUGGUCAGAAUAUCGGCGCUGGCCGCAAGAUUCUGCUCGGCAAGUAAAUC----
((((((((.((...(((((((....)))))))........(((.....))).)))))))))).........(((.((((((......)))..))).))).....---- ( -41.50)
>consensus
CUGGCCAGACCAUCGUCGGUCUGCAGGCCGGUUCCAACAAGGGAGCCACCCAGGCUGGCCAGAACAUCGGCGCUGGCCGCAAGAUCCUGCUCGGCAAGUAAAUU__C_
((((((((.((......((((....))))(((.((......)).))).....)))))))))).........(((.((((((......)))..))).)))......... (-34.50 = -34.53 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:06 2006