Locus 2432

Sequence ID 2R_DroMel_CAF1
Location 8,739,808 – 8,739,907
Length 99
Max. P 0.540142
window4026

overview

Window 6

Location 8,739,808 – 8,739,907
Length 99
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 88.18
Mean single sequence MFE -27.30
Consensus MFE -18.31
Energy contribution -19.25
Covariance contribution 0.94
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 0.67
SVM decision value 0.01
SVM RNA-class probability 0.540142
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8739808 99 - 20766785
AUC-----UUCUUCUUUGCUAUCAUGACUGAAUGAAACUCAUGAAGUUAAUCAGUUCAGUACUGCGGGGUACGGUAAAUACCGCAUAAACGCGGCGACGGACAA
...-----...(((.(((((......(((((((((((((.....))))..))).))))))...(((..((.((((....)))).))...)))))))).)))... ( -23.80)
>DroSec_CAF1 2609 99 - 1
UUC-----UUUUUAUUUGGUAUCAUUACUGAAUGAAACUCAUGAAGUCAAUCAGUUGGCUACUGCGGUUUACGGUAAAUGCCGCAUAAACGCGGCGACGGACAA
...-----.(((((((..(((....)))..)))))))........(((..((.......(((((.......)))))...(((((......)))))))..))).. ( -27.20)
>DroSim_CAF1 2622 99 - 1
UUC-----UUUUUAUUUGGUAUCAUUACUGAAUGAAACUCAUGAAGUUAAUCAGUUGGCUACUGCAGUUUACGGUAAAUGCCGCAUAAACGCGGCGACGGACAA
...-----.(((((((..(((....)))..)))))))........(((..((.......(((((.......)))))...(((((......)))))))..))).. ( -25.40)
>DroEre_CAF1 5716 104 - 1
UUCCACUUUUUUUGUUUGGUAUCAAGACUGAAUGAAACUCAUUCAGCUAAUCAGUGGGCUACUGCGGUUUACGGUAAAUGCCGCAUAAACGCGGCGACGGACAA
...........(((((((.((((.((.(((((((.....))))))))).....(((((((.....)))))))))))..((((((......)))))).))))))) ( -32.80)
>consensus
UUC_____UUUUUAUUUGGUAUCAUGACUGAAUGAAACUCAUGAAGUUAAUCAGUUGGCUACUGCGGUUUACGGUAAAUGCCGCAUAAACGCGGCGACGGACAA
.........(((((((((((......)))))))))))........(((..((.......(((((.......)))))...(((((......)))))))..))).. (-18.31 = -19.25 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:01 2006