Locus 2428

Sequence ID 2R_DroMel_CAF1
Location 8,722,588 – 8,722,689
Length 101
Max. P 0.975239
window4017

overview

Window 7

Location 8,722,588 – 8,722,689
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.13
Mean single sequence MFE -32.19
Consensus MFE -14.00
Energy contribution -14.68
Covariance contribution 0.68
Combinations/Pair 1.17
Mean z-score -2.18
Structure conservation index 0.43
SVM decision value 1.75
SVM RNA-class probability 0.975239
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8722588 101 + 20766785
GCUGGAUAUCGAUAU--CCACUAUC--------------AGGGUUGCCACAU--UUUCA-GCCGGUCAGCUGUUGCUUCCGAUAAUCAACUGCAUCUUCUGUUAUCGAUUGGCGGCAACA
..((((((....)))--))).....--------------...((((((....--.....-((((((((((....)))...((((((..............))))))))))))))))))). ( -27.64)
>DroSec_CAF1 7696 114 + 1
--UAGCCAUCGAUAUAAUCACUAUCGAUAUAAACACUUUAUGGUUG-CACAC--UUUCA-GCCGGUCAGCUGUUGCUUCCGAUAAGCAACUGCAUCUUCUGUUAUCGAUUGGCGGCAACU
--..((((((((((.......)))))))..................-.....--.....-(((((((.((.(((((((.....))))))).)).......(....))))))))))).... ( -31.80)
>DroSim_CAF1 8007 114 + 1
--UAGCCAUCGAUAUAAUCACUAUCGAUAUAAACACUUUAUGGUUG-CACAC--UUUCA-GCCGGUCAGCUGUUGCUUCCGAUAAGCAACUGCAUCUUCUGUUAUCGAUUGGCGGCAACU
--..((((((((((.......)))))))..................-.....--.....-(((((((.((.(((((((.....))))))).)).......(....))))))))))).... ( -31.80)
>DroEre_CAF1 7987 97 + 1
GCCAGC------UAU--CGGCUC--------------UCAUGAUUA-CCUAUCGUUCGUGGGCGGUCAGCUGUUAUUUCCGAUAGGCAGCCGCAUCUGCUGCUAUCGAUUGGCGGCAACA
(((...------...--.)))..--------------...((((..-(((((.....)))))..))))(((((((....((((((.((((.......))))))))))..))))))).... ( -34.40)
>DroYak_CAF1 8499 102 + 1
GCUAACAAUCGAUAU--CGAGCC--------------UCAUCAUUG-CCUAUCGUUCGA-GGCGGUCAGCUGUUGCUUCCGAUUGGCAAGCGCAUCUCCUGCUAUCGAUUGGCGGCAACA
(((..(((((((((.--...(((--------------..(((...(-(((........)-)))((..(((....))).))))).)))....(((.....))))))))))))..))).... ( -35.30)
>consensus
GCUAGCCAUCGAUAU__CCACUAUC____________UCAUGGUUG_CACAU__UUUCA_GCCGGUCAGCUGUUGCUUCCGAUAAGCAACUGCAUCUUCUGUUAUCGAUUGGCGGCAACA
............................................................(((((((.((.(((((((.....))))))).)).......(....))))))))(....). (-14.00 = -14.68 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:53 2006