Locus 2427

Sequence ID 2R_DroMel_CAF1
Location 8,716,241 – 8,716,361
Length 120
Max. P 0.650755
window4016

overview

Window 6

Location 8,716,241 – 8,716,361
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.83
Mean single sequence MFE -39.04
Consensus MFE -30.03
Energy contribution -28.84
Covariance contribution -1.19
Combinations/Pair 1.51
Mean z-score -1.64
Structure conservation index 0.77
SVM decision value 0.24
SVM RNA-class probability 0.650755
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8716241 120 - 20766785
UCGCCGAUUAUGUAGCCGUCGUCGUUGAAGAUUGUAAUGAAGGGCAAAUUGCAGCGCUUGCCCACCUCGUAAUCGUUGGGAUCGUGGGCUGGGGUGAUCUUCACAGCACCCGUACCGAAA
....((((((((.((......((((((.......)))))).((((((..........))))))..))))))))))((((...((.((((((.((......)).)))).))))..)))).. ( -34.60)
>DroVir_CAF1 1795 120 - 1
UCGCCAAUGAUGAAGCCAUCGUCAUUGAAGAUGGUAAUAAAAGGCAAAUUACAGCGUUUGCCCACCUCGUAGUCAUUGGGAUCAUGGGCGGGUGUAAUUUUAACUGCUCCUGUACCAAAA
((.((((((((...((((((.........)))))).......(((((((......))))))).........))))))))))...((((((((.(((........))).))))).)))... ( -38.30)
>DroGri_CAF1 1760 120 - 1
UCACCAACAAUGAAGCCAUCAUCGUUGAUGAUGGUAAUAAAUGGAAGAUUACAACGCUUGCCCACCUCGUAGUCAUUGGGAUCGUGGGCGGGUGUAAUCUUAACAGCACCAGUGCCAAAA
...(((........(((((((((...)))))))))......)))((((((((...((((((((((((((.......))))...))))))))))))))))))....(((....)))..... ( -41.04)
>DroWil_CAF1 1316 120 - 1
UCUCCAAUGAUGUAGCCAUCGUCGUUGAAAAUGGUGAUAAAUGGAAGAUUACAACGCUUGCCCACCUCAUAAUCAUUGGGAUCAUGGGCCGGAGUAAUCUUUACGGCUCCAGUACCAAAU
....((((((((.......))))))))....(((((.....(((((((((((..((...(((((.((((.......))))....)))))))..))))))).......)))).)))))... ( -34.71)
>DroMoj_CAF1 1736 120 - 1
UCGCCAAUGAUAAAGCCGUCAUCAUUGAAUAUGGUAAUGAAGGGCAGAUUGCAGCGUUUGCCCACCUCGUAGUCAUUGGGAUCGUGGGCGGGAGUUAUCUUAACGGCGCCCGUGCCAAAG
((.((((((((...(((((((....)))...)))).((((.((((((((......))))))))...)))).))))))))))...((((((((.(((........))).))))).)))... ( -40.00)
>DroAna_CAF1 1321 120 - 1
UCGCCGAUGAUGAAGCCGUCGUCGUUGAAGAUUGUGAUGAAGGGUAGGUUGCAACGCUUGCCCACCUCGUAGUCAUUGGGAUCGUGAGCCGGGGUGAUCUUCACGGCACCUGUGCCAAAG
....((((((((....)))))))).((((((((........((((((((......))))))))((((((...((((.......))))..)))))))))))))).((((....)))).... ( -45.60)
>consensus
UCGCCAAUGAUGAAGCCAUCGUCGUUGAAGAUGGUAAUAAAGGGCAGAUUACAACGCUUGCCCACCUCGUAGUCAUUGGGAUCGUGGGCGGGAGUAAUCUUAACGGCACCAGUACCAAAA
....((((((((.......))))))))....(((((.....(((((((((((....(..((((((((((.......))))...))))))..).))))))).......)))).)))))... (-30.03 = -28.84 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:52 2006