| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,710,651 – 8,710,751 |
| Length | 100 |
| Max. P | 0.620824 |
| Location | 8,710,651 – 8,710,751 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.86 |
| Mean single sequence MFE | -29.18 |
| Consensus MFE | -21.81 |
| Energy contribution | -22.62 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8710651 100 + 20766785 ---GCACCCUUUCUCCACCCACAAAAA---UAAGGGGAAACCCGUCACUCGGCAAGGAUAAAGUGCGCUCCAGGCGGAAUAUACUGCAUCACCUGCAUGCCGAGUC ---((((..(((.(((...........---...(((....)))(((....)))..))).)))))))((((..((((........((((.....)))))))))))). ( -28.20) >DroSec_CAF1 16786 100 + 1 ---GCACCCUUUCUCCACCCACAAAAA---UAAGGGGAAACCCGUCACUCUGCAAGGAUAAAGUGUGCUCCAGGCGGAAUAUACUGCAUCACCUGCAUGCCGAGUC ---((((.((((.(((...........---...(((....)))((......))..))).)))).))))....((((........((((.....))))))))..... ( -27.60) >DroEre_CAF1 17608 101 + 1 CCUGCACCCCUUCUCCACCCACAAGCA---UAAGGGGAAACCGGGCACUCUGCAAGGA--AAGUGUGCUCCAGGCGAAGCAUACUGCAUCACCUGCACGCCGAGUC (((((((((.((((((...........---...))))))...))).....))).))).--..((((((...(((.((.((.....)).)).)))))))))...... ( -29.44) >DroYak_CAF1 17610 103 + 1 ---GCACUCAUUCUUCACCCACAAAAAAAUUGAGGGGAGACCCGGCACUCUGCAAGGAUAAAGUGUGCUCCAGGCGGAAAAUACUGCAUCACCUGCACGCCGAGUC ---..((((........................(((....)))(((....((((.((((..(((((..(((....)))..)))))..))).).)))).))))))). ( -31.50) >consensus ___GCACCCUUUCUCCACCCACAAAAA___UAAGGGGAAACCCGGCACUCUGCAAGGAUAAAGUGUGCUCCAGGCGGAAUAUACUGCAUCACCUGCACGCCGAGUC ...((((.((((.(((.................(((....)))(........)..))).)))).))))....((((........((((.....))))))))..... (-21.81 = -22.62 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:44 2006