Locus 2412

Sequence ID 2R_DroMel_CAF1
Location 8,683,053 – 8,683,167
Length 114
Max. P 0.804910
window3994

overview

Window 4

Location 8,683,053 – 8,683,167
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.27
Mean single sequence MFE -39.60
Consensus MFE -33.38
Energy contribution -33.17
Covariance contribution -0.22
Combinations/Pair 1.08
Mean z-score -2.26
Structure conservation index 0.84
SVM decision value 0.63
SVM RNA-class probability 0.804910
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8683053 114 + 20766785
AAUACUGCGCUG-----GGAUGCAUCAAUUGUGUCAUGGAGUUAGUCGGGUGCAUUGCUCGAUUUAUCUGCGAAAGUGGGCAUG-GUGUAGACAUGGUAGCUUCAUUCGAGCGCAUCAAG
.....((((((.-----(((((((.....))))))((((((((((((((((.....)))))))...((..(....)..))((((-.......)))).))))))))).).))))))..... ( -41.00)
>DroSim_CAF1 851 115 + 1
AAUACUGCGCUG-----GGAUGCAUCAAUUGUGUCAUGGAGUUAGUCGGGUGCAUUGCUCGAUUUAUCUGCGAAAGUGGGCAUAUAUGUAGACAUGGUAGCUUCAUUCGAGCGCAUCAAG
.....((((((.-----(((((...(.((..((((........((((((((.....))))))))..((..(....)..))..........))))..)).)...))))).))))))..... ( -39.00)
>DroYak_CAF1 829 118 + 1
AAUACUGCGAUGCGAUGCGAUGCAUCAAUUGUGUCAUGGAGUUAGUCGGGUGCAUUGCUCGAUUUAUCUGCGAAAACGGGCGU--UUGCAGCGAAUGUAGCUUCAUUCGAGCGCAUCAAG
........((((((...(((((((.....))))))(((((((((.((.(.((((.((((((.(((.......))).)))))).--.)))).)))...)))))))))..)..))))))... ( -38.80)
>consensus
AAUACUGCGCUG_____GGAUGCAUCAAUUGUGUCAUGGAGUUAGUCGGGUGCAUUGCUCGAUUUAUCUGCGAAAGUGGGCAU__AUGUAGACAUGGUAGCUUCAUUCGAGCGCAUCAAG
.....((((((.......((((((.....))))))((((((((((((((((.....)))))))...((((((...((....))...)))))).....)))))))))...))))))..... (-33.38 = -33.17 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:31 2006