Locus 2409

Sequence ID 2R_DroMel_CAF1
Location 8,678,476 – 8,678,581
Length 105
Max. P 0.887160
window3991

overview

Window 1

Location 8,678,476 – 8,678,581
Length 105
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 72.58
Mean single sequence MFE -38.26
Consensus MFE -18.82
Energy contribution -18.73
Covariance contribution -0.08
Combinations/Pair 1.25
Mean z-score -1.92
Structure conservation index 0.49
SVM decision value 0.94
SVM RNA-class probability 0.887160
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8678476 105 - 20766785
----------UUCAUUCACUUCUCCG--GCAAUCCCCUAGAGCAUUGCCUUGCACUCGCUCUCGGCGAUGCUGUGCUGGAUGCAGUGGUUGAUCUCGGCGAAGCCAGGUCGCUCACU
----------................--(((.(((..((.(((((((((..((....))....))))))))).))..))))))((((..((((((.(((...)))))))))..)))) ( -39.10)
>DroVir_CAF1 4309 111 - 1
--CUGGCUAGCAGAUUCGUGG--UUGGAUGCA--UCCUAGAGCAUCGCCUUGCACUCGCUCUCAGCAAUGCUGUGCUGGAUGCAGUGAUUGAUUUCCGCGAAGCCAGGUCGUUCGCU
--((((((.......((((((--(..(.((((--(((...(((((.((.((((...........)))).)).))))))))))))....)..)...)))))))))))).......... ( -38.51)
>DroPse_CAF1 3595 113 - 1
GAUUGAUC--UACAUCCAGAUCCCUU--CACAUGCUCUAGAGCAUGGCUUUGCACUCGUUCUCUGCUAUGCUGUGCUGGAUGCAGUGGUUGAUCUCGGCAAAGCCUGGUCGCUCGCU
((.(((((--.......(((((...(--(((.((((((((((((((((...((....)).....))))))))...))))).)))))))..))))).(((...))).))))).))... ( -36.60)
>DroGri_CAF1 4328 108 - 1
GGUUGACUG---GAGUCUAGA--AUG--UGGA--UUCUAGAGCAUCGCCUUGCACUCGCACUCGGCGAUGCUGUGCUGAAUGCAAUGAUUGAUCUCCGCGAAGCCUGGUCGCUCGCU
(((..((((---(((((((..--...--))))--))))))(((((((((.(((....)))...))))))))).(((.....)))....)..)))...((((.((......)))))). ( -41.70)
>DroAna_CAF1 3879 102 - 1
----------UUCAA---UGUCCCCG--GCAAUCUCCUACAGCAUCGCCUUGCACUCACUCUCGGCAAUGCUGUGCUGGAUGCAGUGAUUAAUUUCUGCAAAGCCGGGCCGUUCGCU
----------...((---((..((((--((.((((..((((((((.(((..............))).))))))))..))))((((..........))))...)))))).)))).... ( -37.04)
>DroPer_CAF1 3596 113 - 1
GAUUGAUC--UACAUCCAGAUCCCUU--CACAUGCUCUAGAGCAUGGCUUUGCACUCGUUCUCUGCUAUGCUGUGCUGGAUGCAGUGGUUGAUCUCGGCAAAGCCUGGUCGCUCGCU
((.(((((--.......(((((...(--(((.((((((((((((((((...((....)).....))))))))...))))).)))))))..))))).(((...))).))))).))... ( -36.60)
>consensus
__UUGA____UACAUUCAGGUCCCUG__CACAU_CCCUAGAGCAUCGCCUUGCACUCGCUCUCGGCAAUGCUGUGCUGGAUGCAGUGAUUGAUCUCGGCAAAGCCUGGUCGCUCGCU
........................................((((((((...((....)).....)))))))).(((.....)))((((.(((((...((...))..))))).)))). (-18.82 = -18.73 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:28 2006