Locus 2406

Sequence ID 2R_DroMel_CAF1
Location 8,649,411 – 8,649,509
Length 98
Max. P 0.625630
window3986

overview

Window 6

Location 8,649,411 – 8,649,509
Length 98
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.07
Mean single sequence MFE -26.90
Consensus MFE -18.67
Energy contribution -18.96
Covariance contribution 0.28
Combinations/Pair 1.30
Mean z-score -1.44
Structure conservation index 0.69
SVM decision value 0.19
SVM RNA-class probability 0.625630
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8649411 98 - 20766785
UGAAAUCCCAAAUUUGAUAUACAAUAAUUUCGACGCC-----ACUCACCUUUGCGUACAGUUGCUGCAUCUCCUUUGAGUAGCGCUUGUGCAGGGAUUCCUUG
.(.((((((....((((.((......)).))))....-----............((((((.((((((.((......)))))))).)))))).)))))).)... ( -24.80)
>DroSec_CAF1 3951 98 - 1
UGAAAUCCCAGAUUUAACAUACAGGAAUUCUGACGCC-----ACUCACCUUUGCGUACAGUUGCUGCAUCUCUUUUGAGUAGCGCUUGUGCAGGGAUUCCUUG
..(((((...))))).......(((((((((...((.-----..........))((((((.((((((.((......)))))))).)))))).))))))))).. ( -26.70)
>DroSim_CAF1 4200 98 - 1
UAAAAUCCCAGAUUUAACAUACAGGAAUUCCGACGCC-----ACUCACCUUUGCGUACAGUUGCUGCAUCUCCUUUGAGUAGCGCUUGUGCAGGGAUUCCUUG
..(((((...))))).......(((((((((...((.-----..........))((((((.((((((.((......)))))))).)))))).))))))))).. ( -29.20)
>DroEre_CAF1 4031 98 - 1
UGAAGGUCUAGAUAAAACAGCCAGGAAUACUGACGCC-----ACUUACCUUUGCGUACAGUUGCUGCAUCUCCUUUAAGUAGCGCUUGUGCAGGGAUUCCUUG
....(((............)))((((((.(((((((.-----..........))))((((.((((((...........)))))).)))).)))..)))))).. ( -22.30)
>DroYak_CAF1 4077 98 - 1
UGAAAUUCCGGAAACAACAGCCAGGAAUUCCGACGCC-----ACUCACCUUUGCGUACAGUUGCUGCAUCUCCUUCGAGUAGCGCUUGUGCAGGGAUUCCUUG
.........(....).......(((((((((...((.-----..........))((((((.((((((.((......)))))))).)))))).))))))))).. ( -30.30)
>DroAna_CAF1 3716 102 - 1
GUUAUUCCCA-AUUGAGCGUAUUGAGGAGGAGACGCCUCAAUACUUACCUUUGUGUACAGUUGCUGCAUCUCCUUCACGUAUCUCUGGUGCAUCGACUCCUUG
..........-.......(((((((((.(....).)))))))))..............(((((.((((((................)))))).)))))..... ( -28.09)
>consensus
UGAAAUCCCAGAUUUAACAUACAGGAAUUCCGACGCC_____ACUCACCUUUGCGUACAGUUGCUGCAUCUCCUUUGAGUAGCGCUUGUGCAGGGAUUCCUUG
......................(((((((((...((................))((((((.((((((...........)))))).)))))).))))))))).. (-18.67 = -18.96 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:23 2006