| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,648,449 – 8,648,548 |
| Length | 99 |
| Max. P | 0.898980 |
| Location | 8,648,449 – 8,648,548 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.16 |
| Mean single sequence MFE | -21.48 |
| Consensus MFE | -8.38 |
| Energy contribution | -8.98 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.39 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.898980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8648449 99 + 20766785 GAAAGUAUGCAACAAUAUAUAU-GAUUGACU-GGUU-AAUA-----AUUGUGUAAACUCUAAUGGU---ACAUCAGUUUUCGGAAUUCGGAAAAAGAAGUUCCGAAAAUG-- ...(((.((((.((((.(((.(-((((....-))))-))))-----)))))))).)))........---......(((((((((((((.......).)))))))))))).-- ( -19.40) >DroSec_CAF1 2974 100 + 1 GAAAGUAUGCAACAAUAUACAUUUAUUGACU-GGUU-AGUA-----AUGGUGUAAACCAUAAUUGA---UCAUCAGUUUUCGGAAUUCGGAAAAAGAAGUUCCGAAAAUC-- ....(((((......)))))......(((.(-((((-(((.-----(((((....))))).)))))---))))))(((((((((((((.......).)))))))))))).-- ( -28.90) >DroSim_CAF1 3222 100 + 1 GAAAGUAUGCAACAAUAUACAUUUAUUGACU-GGUU-AGUA-----AUGGCGUAAACUAUAAUUGA---UCAUCAGUUUUCGGAAUUCGGAAAAAGAAGUUCCGAAAAUC-- ....(((((......)))))......(((.(-((((-(((.-----((((......)))).)))))---))))))(((((((((((((.......).)))))))))))).-- ( -24.30) >DroEre_CAF1 2965 104 + 1 AAAGGUAUGCAACAAUAUAUUUUGAAUGCCU-AGUUUUUUAAAGGCAUUGUGU----CUCGAUUAA---CAAUGAGUUUUCGGAAUUGGGAAAGAGUAUUACCGAAAAUCUA ...(((((((..(((......)))....(((-((((((..(((..((((((..----........)---)))))..)))..))))))))).....))).))))......... ( -22.70) >DroYak_CAF1 2966 98 + 1 AAAAGUGUGCCACAAUAAAUUUGCAAUGCCACAGGAUUU--------UUUUUU----UUCAACUAACUACAAUGAGUUUUUGGAACUCGGAAAAAUAAUUACCGAAAAUA-- ....(((.((..(((.....)))....))))).......--------.....(----(((((..((((......)))).)))))).((((...........)))).....-- ( -12.10) >consensus GAAAGUAUGCAACAAUAUAUAUUGAUUGACU_GGUU_AGUA_____AUUGUGUAAACUAUAAUUGA___CCAUCAGUUUUCGGAAUUCGGAAAAAGAAGUUCCGAAAAUC__ ....(((((......))))).......................................................((((((((((((..........))))))))))))... ( -8.38 = -8.98 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:22 2006