Locus 24

Sequence ID 2R_DroMel_CAF1
Location 1,165,798 – 1,165,899
Length 101
Max. P 0.833443
window45

overview

Window 5

Location 1,165,798 – 1,165,899
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 73.57
Mean single sequence MFE -18.97
Consensus MFE -13.71
Energy contribution -13.17
Covariance contribution -0.55
Combinations/Pair 1.20
Mean z-score -1.33
Structure conservation index 0.72
SVM decision value 0.72
SVM RNA-class probability 0.833443
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1165798 101 - 20766785
CUUAUGUGAUCAAGGUCAAACGUCUUUCAAUUAAAUUAAUUCGAUCCCAGCUUGUUUGUUGCGGACUUGGUUGAUGAAAAACUAAGUUUAGACGGUUUAAU
......((((....))))..(((((...................(((((((......)))).)))(((((((.......)))))))...)))))....... ( -21.70)
>DroSec_CAF1 1315 78 - 1
-----------------------CUUUCAAUUAGGUUAGUUCGGUAUGAGUUUGUUUGUUGCGGACUCUAUUGAUGGAAAACCAAGUUUAGACGGUUUAAU
-----------------------.(((.((((.((((...((((((.((((((((.....)))))))))))))).....)))).)))).)))......... ( -17.40)
>DroSim_CAF1 4888 78 - 1
-----------------------CUUUCAAUUAGGUUAGUUCGGUAUGAGUUUGUUUGUUGCGAACUCUAUUGAUGAAAAACCAAGUUUAGACGGUUUAAU
-----------------------.(((.((((.((((...((((((.((((((((.....)))))))))))))).....)))).)))).)))......... ( -17.80)
>consensus
_______________________CUUUCAAUUAGGUUAGUUCGGUAUGAGUUUGUUUGUUGCGGACUCUAUUGAUGAAAAACCAAGUUUAGACGGUUUAAU
........................(((.((((.((((...((((((.((((((((.....)))))))))))))).....)))).)))).)))......... (-13.71 = -13.17 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:46 2006