Locus 2390

Sequence ID 2R_DroMel_CAF1
Location 8,626,985 – 8,627,081
Length 96
Max. P 0.728045
window3954

overview

Window 4

Location 8,626,985 – 8,627,081
Length 96
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.78
Mean single sequence MFE -35.47
Consensus MFE -21.64
Energy contribution -24.36
Covariance contribution 2.72
Combinations/Pair 1.11
Mean z-score -1.98
Structure conservation index 0.61
SVM decision value 0.42
SVM RNA-class probability 0.728045
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8626985 96 + 20766785
----GGGAAUGAGGGGAGCAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACA-----GACCCCUUUCUGGCCAUCUCGUUCCCACUUUCAGCC
----(((((((((((((((((((.((....))...)))).....)))))).....(((((((.(-----(....)).))).)))).))))))))).......... ( -42.30)
>DroSec_CAF1 6594 101 + 1
----GGGAUUGAGGGGAGUAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACAGACCAGACCCCUUUCUGGCCAUCUCGUUCCCACUUCCAGCC
----((((.((((((((((((((.((....))...))))).....))))).....(((((((.((.........)).))).)))).)))).)))).......... ( -35.50)
>DroSim_CAF1 6567 100 + 1
----GGGAUUGAGGGG-GCAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACAGAACAGACCCCUUUCUGGCCAUCUCGUUCCCACUUCCAGCC
----((((.((((..(-((.((((((....)).(..(((....)))..)......))))...(((((.((....))))))))))..)))).)))).......... ( -38.30)
>DroEre_CAF1 7195 96 + 1
----GGGACUGAGGGGAGCAGCCAGCGGAAGCCGAGGCUGAAAAGUUGCCAAAUUUGGUAGACA-----GACCCCUUUCUGGCCAUCUCGUUCCCACCUCCAGCC
----((((.(((((((..(((((.((....))...))))).....((((((....)))))).((-----((......)))).)).))))).)))).......... ( -34.70)
>DroYak_CAF1 7146 96 + 1
----GGGAAUGAGGGGAGCAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGUAGACA-----GACCCCUUUCUGGCCACCUCGUUCCCACUUUCAGCC
----(((((((((((((((((((.((....))...)))).....)))))).....(((((((.(-----(....)).))).)))).))))))))).......... ( -40.40)
>DroAna_CAF1 7275 82 + 1
GACCAGGACUGCCAGG-ACAGCCGGCGGAAACAGAGGCUGAA-AGUUCCCAAAUUCAGCACACA-----GACCUCCGUC----------------CUUUGAAGCC
....(((((.(((.((-....)))))(....).(((((((..-.(((.........)))...))-----).)))).)))----------------))........ ( -21.60)
>consensus
____GGGAAUGAGGGGAGCAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACA_____GACCCCUUUCUGGCCAUCUCGUUCCCACUUCCAGCC
....((((.((((((((((((((.((....))...))))).....))))).....(((((((...............))).)))).)))).)))).......... (-21.64 = -24.36 +   2.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:52 2006