| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,612,132 – 1,612,233 |
| Length | 101 |
| Max. P | 0.997620 |
| Location | 1,612,132 – 1,612,233 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 74.29 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -17.56 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.91 |
| SVM decision value | 2.90 |
| SVM RNA-class probability | 0.997620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1612132 101 + 20766785 UACCUUGGCAGAAGAAUGGGCUUAGGUAGAUUUUUAAUUUUCCGUUAAAUGUUAUACUCAACAUUCAGGUGAAAAGUCCCAGUUACCUGCUAAUGGCAAUA ..(((((((((.....(((((((.((.((((.....)))).))....((((((......))))))........))).)))).....))))))).))..... ( -23.00) >DroSec_CAF1 21817 78 + 1 UGCCUUGGCAGAAGAAUGGGCUAAGGUAGACUUUUAAGUUUCUUUAAAAUGUUAUACUCAAUAUUCAAGUGAAAAGUC----------------------- (((((((((..........)))))))))(((((((......(((...((((((......)))))).)))..)))))))----------------------- ( -17.00) >DroSim_CAF1 18275 78 + 1 UGCCUUGGCAGAAGAAUGGGCUAAGGUAGACUUUUCAGUUUCUUUAAAGUGUUAUACCCAACAUUCAAGUUAAAAGUC----------------------- (((((((((..........)))))))))(((((((......(((...((((((......)))))).)))..)))))))----------------------- ( -17.80) >consensus UGCCUUGGCAGAAGAAUGGGCUAAGGUAGACUUUUAAGUUUCUUUAAAAUGUUAUACUCAACAUUCAAGUGAAAAGUC_______________________ (((((((((..........)))))))))(((((((......((....((((((......))))))..))..)))))))....................... (-17.56 = -16.57 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:15 2006