Locus 2386

Sequence ID 2R_DroMel_CAF1
Location 8,619,322 – 8,619,423
Length 101
Max. P 0.761412
window3949

overview

Window 9

Location 8,619,322 – 8,619,423
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.88
Mean single sequence MFE -28.78
Consensus MFE -12.72
Energy contribution -13.00
Covariance contribution 0.28
Combinations/Pair 1.43
Mean z-score -1.90
Structure conservation index 0.44
SVM decision value 0.50
SVM RNA-class probability 0.761412
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8619322 101 + 20766785
--------------AUUGGGGGUUUGUCCAAC----CAAUCCCCG-AAUUCAGAUUGGGGACACAUGCAAACGGCUGAAAGCUAUAAAAUCUUUCACCAAAGAAGUUUCCGAGUUCCGAG
--------------.(((((((((.(.....)----.))))))))-)..((.((((((..((..........(((.....)))......(((((....))))).))..))))..)).)). ( -25.80)
>DroSec_CAF1 21586 98 + 1
--------------AUCGGGGGUUUGUCCAAG----CAAUCCCCA-AAUUCAGAUUGGGGACACAUGCAAACGGCUGAAAGCUAUAAAAUCUUUCACCAAAGAAGUUUCCGAGUUC---G
--------------.(((((..(((......(----((.((((((-(.......)))))))....)))....((.((((((.........))))))))....)))..)))))....---. ( -27.40)
>DroSim_CAF1 18917 98 + 1
--------------AUUGGGAGUUUGUCCAAG----CAAUCCCCA-AAUUCAGAUUGGGGACACAUGCAAACGGCUGAAAGCUAUAAAACCUUUCACCAAAGAAGUUUCCGAGUUC---G
--------------.((((((((((((.....----...((((((-(.......))))))).....))))))((.((((((.........))))))))........))))))....---. ( -26.22)
>DroEre_CAF1 19507 111 + 1
GGUCCUGUGGAUACAUCGCAGGA-C-CCCAGGCCCACAAGCCUCC-AUUUCGAAGUGGAGACACAUUGAGCCGGCUAAGAGCAAUAAAAGCGUUUGCCAAGAAAGUCUCC---UUU---G
((((((((((.....))))))))-)-)...(((..((.((((...-..(((((.(((....))).)))))..))))....((.......))))..)))............---...---. ( -36.40)
>DroYak_CAF1 15084 98 + 1
--------------AUUGCGGGU-UGUCCAAG----CAAUCCCCAAAAUCCGAAAUGGGGACACAUGCAAACGGCUGAAAGCAAUAAAAUCUUUCAGCAAAGAAGUUUCCGACUUC---G
--------------.(((((((.-...))...----...((((((..........))))))....)))))...((((((((.........))))))))...((((((...))))))---. ( -28.10)
>consensus
______________AUUGGGGGUUUGUCCAAG____CAAUCCCCA_AAUUCAGAUUGGGGACACAUGCAAACGGCUGAAAGCUAUAAAAUCUUUCACCAAAGAAGUUUCCGAGUUC___G
...............(((((((.................((((((..........))))))...........((.((((((.........)))))))).......)))))))........ (-12.72 = -13.00 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:47 2006