Locus 2382

Sequence ID 2R_DroMel_CAF1
Location 8,616,462 – 8,616,582
Length 120
Max. P 0.524528
window3941

overview

Window 1

Location 8,616,462 – 8,616,582
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.08
Mean single sequence MFE -34.83
Consensus MFE -33.97
Energy contribution -34.23
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.98
SVM decision value -0.02
SVM RNA-class probability 0.524528
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8616462 120 + 20766785
CACAACGUUCUACAUCCGGAAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGAAGCGAACAGUUUCCCAUUUCCAAUUUCGAUCC
.....((..........((.....))..((..(((((((.....((((......))))..))((((..((((((............))))))..))))..)))))..)).....)).... ( -35.40)
>DroSec_CAF1 18769 120 + 1
CACAACCUUCUACACCCGGAAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGAAGCGAACAGUUUCCCAUUUCCCAUUUCGAUCC
.................((.....))..((..(((((((.....((((......))))..))((((..((((((............))))))..))))..)))))..))........... ( -34.40)
>DroEre_CAF1 16604 120 + 1
CACAACCUUCUACACCCGGGAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGAAGCGAACAGUUUCCCAUUUCCCAUUUCGAUCC
.................((....))...((..(((((((.....((((......))))..))((((..((((((............))))))..))))..)))))..))........... ( -37.40)
>DroYak_CAF1 12267 119 + 1
CACAACCUUCUGCGCCCGGAAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGA-GCGAACAGUUUCCCAUUUCCCAUUUCGAUCC
.......(((((....))))).......((..(((((((.....((((......))))..))((((..(((((.............))-)))..))))..)))))..))........... ( -32.12)
>consensus
CACAACCUUCUACACCCGGAAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGAAGCGAACAGUUUCCCAUUUCCCAUUUCGAUCC
.................((.....))..((..(((((((.....((((......))))..))((((..((((((............))))))..))))..)))))..))........... (-33.97 = -34.23 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:40 2006