Locus 2381

Sequence ID 2R_DroMel_CAF1
Location 8,615,766 – 8,615,877
Length 111
Max. P 0.884534
window3940

overview

Window 0

Location 8,615,766 – 8,615,877
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.51
Mean single sequence MFE -26.38
Consensus MFE -24.76
Energy contribution -24.96
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.94
SVM decision value 0.93
SVM RNA-class probability 0.884534
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8615766 111 + 20766785
AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCAUGCCCCUAAUCCCAAGACCCC---------
..((((((((((.......)))))))(((.(((((((..((((((....))))))......))))))).....(((((((....)))))))))).......))).......--------- ( -28.80)
>DroSec_CAF1 18090 111 + 1
AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCCUGCCCCUAAUCCCAAUCCCCC---------
..((((((((((.......)))))))(((.(((((((..((((((....))))))......)))))))....((.(((((....)))))))))).......))).......--------- ( -26.80)
>DroSim_CAF1 14682 111 + 1
AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCCUGCCCCUAAUCCCAAUCCCCC---------
..((((((((((.......)))))))(((.(((((((..((((((....))))))......)))))))....((.(((((....)))))))))).......))).......--------- ( -26.80)
>DroEre_CAF1 15907 114 + 1
AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCCUGCCCCUAAUCCCAAACCCCCGGU------
..((((((((((.......)))))))(((.(((((((..((((((....))))))......)))))))....((.(((((....)))))))))).......)))..........------ ( -26.80)
>DroYak_CAF1 11537 120 + 1
AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGCGCCCCUCGGCUCCUGCCUCUAAUCCCAAUCCCCCAAUCCCCCU
..((((((((((.......)))))))(((.(((((((..((((((....))))))......)))))))....((.(.(((....))).)))))).......)))................ ( -22.70)
>consensus
AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCCUGCCCCUAAUCCCAAUCCCCC_________
..((((((((((.......)))))))(((.(((((((..((((((....))))))......))))))).......(((((....)))))..))).......)))................ (-24.76 = -24.96 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:39 2006