| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,603,255 – 1,603,347 |
| Length | 92 |
| Max. P | 0.847574 |
| Location | 1,603,255 – 1,603,347 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 73.27 |
| Mean single sequence MFE | -35.16 |
| Consensus MFE | -19.92 |
| Energy contribution | -19.37 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.847574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1603255 92 - 20766785 AGGGAGUGGCCCACGUAGAAGGAAGAA----GGGUGCACUUGUGCCCAAGUGACGUCUUAGUCGCCUCGACUUCGAUU-----------UUUCCUGCUUUUUGU-----ACC .(((.....)))(((.((.((((((((----(((..(....)..)))..(((((......))))).(((....)))))-----------)))))).))...)))-----... ( -31.10) >DroSec_CAF1 18026 92 - 1 AGGGAGUGGCACACGUAGAAGGAGGGA----GGGCGCACUUGUGCCCAAGUGACGUCUUAGUCGCCUCGACUUCGAUU-----------UUUCCUGCUUCUUGU-----ACC ((((((..(........((((..(((.----((((((....))))))..(((((......))))))))..))))....-----------....)..))))))..-----... ( -36.09) >DroSim_CAF1 14543 92 - 1 AGGGAGUGGCCCACGUAGAAGGAGGGA----GGGUGCACUUGUGCCCAAGUGACGUCUUAGUCGCCUCGACUUCGAUU-----------UUUCCUGCUUCUUGU-----ACC .(((.....)))(((.(((((.(((((----(((..(....)..)))..(((((......))))).(((....)))..-----------.))))).))))))))-----... ( -35.40) >DroEre_CAF1 14762 78 - 1 CAGGAGUGGUGCACGUAGGAGGAGUG----------CACUUGUGCCCAAGUGACGUCUUAGUCGCCUCGACUUCGAUU-----------UUUCCUGCUU------------- ((((((.((((.((....(((..((.----------((((((....))))))))..))).))))))(((....)))..-----------.))))))...------------- ( -25.80) >DroYak_CAF1 27178 96 - 1 CAGGAGUGGUACACUUGGAAGGAGGGCAUUCGUGGGCAUUUGUGCCCAAGUGACGUCUUAGUCGCCUCGACUUCGAUU-----------UUUCCUGCUUCUCGU-----AUC .(((((..(......(.((((..((((.....((((((....))))))...(((......)))))).)..)))).)..-----------....)..)))))...-----... ( -33.10) >DroAna_CAF1 15967 103 - 1 ---GACGGGCGGACCCAGGAGGGGGA------GCUGCACUUGUGGCCAAGUGACGUCUUAGCCGCCUUGGCUUUGCGCCCUCCGCCCUAGCUCCUGCUCCAGGGCCAUCGUC ---(((((..((.(((.((((.((((------(((((....(((((.(((......))).)))))...(((.....)))....))...))))))).)))).))))).))))) ( -49.50) >consensus AGGGAGUGGCACACGUAGAAGGAGGGA____GGGUGCACUUGUGCCCAAGUGACGUCUUAGUCGCCUCGACUUCGAUU___________UUUCCUGCUUCUUGU_____ACC .................((((.((((..........((((((....))))))..(((..(((((...)))))..)))..............)))).))))............ (-19.92 = -19.37 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:14 2006