Locus 2376

Sequence ID 2R_DroMel_CAF1
Location 8,612,404 – 8,612,504
Length 100
Max. P 0.659662
window3930

overview

Window 0

Location 8,612,404 – 8,612,504
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.28
Mean single sequence MFE -38.20
Consensus MFE -30.98
Energy contribution -31.22
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.49
Structure conservation index 0.81
SVM decision value 0.26
SVM RNA-class probability 0.659662
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8612404 100 + 20766785
GCAAAGGAUUCCACGCCCGCUGUUGCC-CAACAUUGGCAACAUUGUGGC-------------------UCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG
(((..(((......(((((.(((((((-.......))))))).)).)))-------------------..(((((((.((((....))))))).))))..)))....))).......... ( -34.80)
>DroSec_CAF1 13300 100 + 1
GCAAAGGAUUCCACGCCCGCUGUUGCC-CAACAUUGGCAACAUUGUGGC-------------------UCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG
(((..(((......(((((.(((((((-.......))))))).)).)))-------------------..(((((((.((((....))))))).))))..)))....))).......... ( -34.80)
>DroSim_CAF1 10166 100 + 1
GCAAAGGAUUCCACGCCCGCUGUUGCC-CAACAUUGGCAACAUUGUGGC-------------------UCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG
(((..(((......(((((.(((((((-.......))))))).)).)))-------------------..(((((((.((((....))))))).))))..)))....))).......... ( -34.80)
>DroEre_CAF1 12609 119 + 1
GCAAAGGAUUCCACGCCCGCUGUUGCC-CAACAUUGGCAACAUUGUGGCCGGAUCCCCCUGCCUGCAGUCGAGUGCUCCUCGCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG
(((..((((((...(((((.(((((((-.......))))))).)).))).))))))..((((((((.(.((((.....))))).))))))))...............))).......... ( -45.10)
>DroYak_CAF1 8108 114 + 1
GCAAAGGAUUCCACGCUCGCUGUUGCCCCAACAUUGGCAACAUUGUGGCCGGAACC------CUGCACUCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG
(((..((.((((..((.((((((((((........)))))))..))))).)))).)------)))).(((((((((((((....)))))).(.(((.(........).))).)))))))) ( -41.50)
>consensus
GCAAAGGAUUCCACGCCCGCUGUUGCC_CAACAUUGGCAACAUUGUGGC___________________UCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG
(((..(((......(((((.(((((((........))))))).)).))).....................(((((((.((((....))))))).))))..)))....))).......... (-30.98 = -31.22 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:29 2006