Locus 2371

Sequence ID 2R_DroMel_CAF1
Location 8,609,577 – 8,609,697
Length 120
Max. P 0.500000
window3915

overview

Window 5

Location 8,609,577 – 8,609,697
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.60
Mean single sequence MFE -26.66
Consensus MFE -20.58
Energy contribution -20.42
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.77
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8609577 120 - 20766785
CUCUACAUCCACAUACAUUCGAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAAUUGCAUUGACCAUCGGCCACCCCCUUUGGAGCCCAGCCCCCUCCCCACUGCA
....................((...((((....))))....))....(((.(((...(((((((.((((...)))).(((..((......))..))))).))))).......))).))). ( -24.30)
>DroSec_CAF1 10469 106 - 1
--CUACAUCCACACACAUUCGAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUGCAAUUGCAUUGACCAUCGGCCACCCACUUUGGAGCC------------CACUGCA
--.....((((.........((...((((....))))....))..(((...(((((.(.(((((((....)))..).))).)))))).)))...))))((.------------....)). ( -22.70)
>DroSim_CAF1 7314 113 - 1
--CUACAUCCACACACAUUCGCAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAAUUGCAUUGACCAUCGGCCACCCACUUUGGAGCCCAGCCC-----CCACUGCA
--.............((...(((..((((....))))..)))...))(((.(((...(((((((.((((...)))).(((..(........)..))))).)))))..-----))).))). ( -27.00)
>DroEre_CAF1 9792 114 - 1
--CUACAUCCACACACAUUCGAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAACUGCACUGACCAUCGGCCACCCACUUUGGGGCCAGCCCC----CCUUUUGCA
--..................((...((((....))))....))....(((..((...((((((..........(((.....)))...(((.....)))))))))...----))...))). ( -28.50)
>DroYak_CAF1 5022 113 - 1
--CUACAUCCACACACAUU-GAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAAUUGCAUUGACCAGCGGCCACCCACUUUGGCGCCCAGCCG----CCCACUGCA
--.............((.(-((...((((....))))....))).))(((.(((((.(((((...((((...)))).))))))))))........((((......))----))...))). ( -30.80)
>consensus
__CUACAUCCACACACAUUCGAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAAUUGCAUUGACCAUCGGCCACCCACUUUGGAGCCCAGCCC____CCCACUGCA
.........................((((....((((..(((..(..(((......)))..)..)))..)))).........(((...((.....)).)))...............)))) (-20.58 = -20.42 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:15 2006