Locus 2366

Sequence ID 2R_DroMel_CAF1
Location 8,590,345 – 8,590,445
Length 100
Max. P 0.964946
window3906

overview

Window 6

Location 8,590,345 – 8,590,445
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 96.33
Mean single sequence MFE -37.42
Consensus MFE -35.79
Energy contribution -36.35
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.31
Structure conservation index 0.96
SVM decision value 1.57
SVM RNA-class probability 0.964946
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8590345 100 - 20766785
CCAUCUGCAGAUGCGACUGCCUCUGCUCCUUGGCUCCCUUUCAUGAUGAUAAAGGUGAUGAUGAUGGGGCUGAAGUGGAUGGUGGCUAGAUGUGCUGAUG
.((((.(((.((.(..(..((((..((..(..(((((...((((.((.((....)).)).)))).)))))..)))..)).))..)...))).))).)))) ( -36.00)
>DroSec_CAF1 66050 100 - 1
CCAUCUGCAGAUGCGGCUGCCUCUGCUUCUUGACUCCCUUUCAUGGUGAUAAAGGUGAUGAUGAUGGGGCUGAUGUGGAUGGUGGCUAGAUGUGCUGAUG
.((((.(((.((..(((..((((..(.((......((((.((((.((.((....)).)).)))).))))..)).)..)).))..)))..)).))).)))) ( -37.60)
>DroEre_CAF1 56555 100 - 1
CCAUCUGCAGAUGCGGCUGCCUCUGCUCCUUGGCUUCCUUUCAUGAUGAUAAAGGUGAUGAUGAUGGGGCUGAAGUGGAUGGUGGCUAGAUGUGCUGAUG
.((((.(((.((..(((..((((..((..(..(((((...((((.((.((....)).)).)))).)))))..)))..)).))..)))..)).))).)))) ( -39.20)
>DroYak_CAF1 69513 100 - 1
CCAUCUGCAGAUGCGGCUGCCUCUGCUCCUUGGCUUCCUUUCAUGAUGAUAAAGGUGAUGAUGAUGGCGCUGAAGUGGAUGGUGGCUAGAUGUGCUGAUG
.((((.(((.((..(((..((((..((..(..((..((..((((.((.((....)).)).)))).)).))..)))..)).))..)))..)).))).)))) ( -36.90)
>consensus
CCAUCUGCAGAUGCGGCUGCCUCUGCUCCUUGGCUCCCUUUCAUGAUGAUAAAGGUGAUGAUGAUGGGGCUGAAGUGGAUGGUGGCUAGAUGUGCUGAUG
.((((.(((.((..(((..((((..((..((((((((...((((.((.((....)).)).)))).))))))))))..)).))..)))..)).))).)))) (-35.79 = -36.35 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:07 2006