| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,588,987 – 8,589,077 |
| Length | 90 |
| Max. P | 0.995611 |
| Location | 8,588,987 – 8,589,077 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 71.94 |
| Mean single sequence MFE | -26.57 |
| Consensus MFE | -11.72 |
| Energy contribution | -12.38 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.44 |
| SVM decision value | 2.60 |
| SVM RNA-class probability | 0.995611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8588987 90 - 20766785 GAAACAGACUGCAGGA---------GGAGUU----G-CAG--GAGGGGAAUGAGGGGAGCAGCCAGCGGAA---GCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACAG ....((((((((((..---------....))----)-)))--...((((((........(((((.((....---))...)))))....))))))...))))........ ( -29.50) >DroGri_CAF1 20953 91 - 1 ----CUGUGUGCAAAA---------GGGGAGAGUCGACAGCUGAGGAGAA-----GGGGGAGUCAGAGGCAGCUGCAGCGGCUGAAAAGUUCCAAAUUUUGGCAGACUG ----..((.(((((((---------..(((((((((.((((((....((.-----.......)).....))))))...)))))......))))...)))).))).)).. ( -24.40) >DroSec_CAF1 64626 77 - 1 GAAACAGACUGCAGGA---------GG-------------------GG-UUGAGGGGAGCAGCCAGCGGAA---GCAGAGGCUGAAAAGUUCCCAAAUUUGGCAGACAG ........((((..((---------..-------------------..-(((.((((..(((((.((....---))...))))).....))))))).))..)))).... ( -24.80) >DroSim_CAF1 65164 78 - 1 GAAACAGACUGCUGGA---------GG-------------------GGAUUGAGGGGAGCAGCCAGCGGAA---GCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACAG ........((((..((---------((-------------------(((((........(((((.((....---))...)))))...)))))))...))..)))).... ( -29.30) >DroEre_CAF1 55225 87 - 1 GAAACAGACUGCA---------AAAGGGGAC----U--GA----GGGGAUUGAGGGGAGCAGCCAGCGGAA---GCCGAGGCUGAAAAGUUGCCAAAUUUGGUAGACAG ........((((.---------..((....)----)--..----((.((((........(((((.((....---))...)))))...)))).)).......)))).... ( -23.80) >DroYak_CAF1 68104 98 - 1 GAAACAGACUGCAGGAGUGGAGAAAGCGGAC----U--GA--GAGGGGAAUGAGGGGAGCAGCCAGCGGAA---GCCGAGGCUGAAAAGUUCCCAAAUUUGGUAGACAG ....(((.((((.............)))).)----)--).--...((((((........(((((.((....---))...)))))....))))))............... ( -27.62) >consensus GAAACAGACUGCAGGA_________GGGGA______________GGGGAAUGAGGGGAGCAGCCAGCGGAA___GCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACAG ........((((..........................................((((((((((..(((......))).)))).....))))))(....).)))).... (-11.72 = -12.38 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:06 2006