Locus 2361

Sequence ID 2R_DroMel_CAF1
Location 8,573,567 – 8,573,687
Length 120
Max. P 0.838956
window3899

overview

Window 9

Location 8,573,567 – 8,573,687
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.65
Mean single sequence MFE -33.64
Consensus MFE -25.04
Energy contribution -26.04
Covariance contribution 1.00
Combinations/Pair 1.23
Mean z-score -1.76
Structure conservation index 0.74
SVM decision value 0.74
SVM RNA-class probability 0.838956
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8573567 120 - 20766785
AAUUAACAUGGGCCACACUGCGUAUGAGCGAUGUGUAUACCAGCUAGUGCGCACAAAUGAACAUCGAAUGCUUUAAGGCCACACGGCGUAUGAGUGAUGCAAUUUUCUGGCCUUAAUGUU
....(((((((((((...(((((((.(((...((....))..))).)))))))........((((....((((..(.(((....))).)..))))))))........))))))..))))) ( -33.20)
>DroSec_CAF1 49156 120 - 1
UAUUAACAUGGGCCACGCUGCGUUUGAGCGAUAUGUAUACCAGCUAGUGCGCACAAAUGAACAUCGAAUGCUUUAAGGCCACACGGCGUAUGAGUGAUGCCAUUUUCUGGCCUUAAAGUU
.......(((..(.....(((((...(((.............)))...))))).....)..))).....((((((((((((...(((((.......)))))......)))))))))))). ( -33.72)
>DroSim_CAF1 53446 120 - 1
UAUUAACAUGGGCCACGCUGCGUAUGAGCGAUAUGCAUACCAGCUAGUCCGCACAAAUGAACAUCGAAUGCUUUAAGGCCACACGGCGUAUGAUUGAUGCCAUUUUCUGGCCUUAAAGUU
.........((((...((((.(((((.........)))))))))..))))...................((((((((((((...(((((.......)))))......)))))))))))). ( -37.60)
>DroEre_CAF1 40122 97 - 1
C--------AGACCACAUUGCGUAUGAGCGAUG--------------UGCGCGCAAAUGAACAUCGAAUACUUUAGGGCCACACGGCGUAUGAGUGAUGCAC-UGGCUGGCCUUAAAGUU
.--------.(.(((((((((......))))))--------------)).)).................((((((((((((..(((.((((.....)))).)-))..)))))))))))). ( -36.20)
>DroYak_CAF1 52817 114 - 1
UAUCAACAUAAGCCACACGGCGUAUAAGCUAUU------UCAGUUAGAGCGCACAAAUGAACAUCGAAUACUUUAAGGCUACACUGCGUAUGAGCAAUGUAGUUUGCUGGCCUUAAAGUU
..(((......(((....)))......(((...------........))).......))).........((((((((((((.(((((((.......)))))))....)))))))))))). ( -27.50)
>consensus
UAUUAACAUGGGCCACACUGCGUAUGAGCGAUAUG_AUACCAGCUAGUGCGCACAAAUGAACAUCGAAUGCUUUAAGGCCACACGGCGUAUGAGUGAUGCAAUUUUCUGGCCUUAAAGUU
...................((((((.(((.............))).)))))).................((((((((((((...(((((.......)))))......)))))))))))). (-25.04 = -26.04 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:00 2006