Locus 2358

Sequence ID	2R_DroMel_CAF1
Location	8,566,195 – 8,566,287
Length	92
Max. P	0.614361

overview

Window 5

Location	8,566,195 – 8,566,287
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	96.52
Mean single sequence MFE	-23.96
Consensus MFE	-21.34
Energy contribution	-22.18
Covariance contribution	0.84
Combinations/Pair	1.04
Mean z-score	-1.26
Structure conservation index	0.89
SVM decision value	0.16
SVM RNA-class probability	0.614361
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8566195 92 + 20766785
GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUCCCA
((((.....((((.....))..((((((..(((((((((.....)))))..)))).(((.((......)).))))))))))).....)))). ( -26.40)
>DroSec_CAF1 41868 92 + 1
GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUCCCA
((((.....((((.....))..((((((..(((((((((.....)))))..)))).(((.((......)).))))))))))).....)))). ( -26.40)
>DroSim_CAF1 45141 92 + 1
GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUCCCA
((((.....((((.....))..((((((..(((((((((.....)))))..)))).(((.((......)).))))))))))).....)))). ( -26.40)
>DroEre_CAF1 32939 92 + 1
GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAGGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCUCGACACUUUCCCA
((((.......(.((((.((.((((......(((((........))))))))).)))))).)..((((((........))))))...)))). ( -23.40)
>DroYak_CAF1 45425 89 + 1
GGGAUUCCAUCGCAAGCUGGCAGUACCAUUCACAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUC---
((((.(((.((......(((.....))).......)))))..)))).......((((((.((......)).)))..)))..........--- ( -17.22)
>consensus
GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUCCCA
((((...((.(....).))...((((((..(((((((((.....)))))..)))).(((.((......)).))))))))).......)))). (-21.34 = -22.18 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:56 2006