Locus 2355

Sequence ID 2R_DroMel_CAF1
Location 8,561,924 – 8,562,026
Length 102
Max. P 0.961658
window3889

overview

Window 9

Location 8,561,924 – 8,562,026
Length 102
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 87.15
Mean single sequence MFE -26.45
Consensus MFE -24.55
Energy contribution -24.80
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.93
SVM decision value 1.53
SVM RNA-class probability 0.961658
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8561924 102 - 20766785
AGGCUGGGUAUAGGACUACUGGCCACAAAUC--------CUGUGAGGCCCAGACAGACUGUUAAAAGGGCUAGAGGGCUUAGCCAGCACAAAAAGAAAAAAAAAAAAGAU
..(((((.((.((..((.((((((.......--------((((.........)))).((......))))))))))..)))).)))))....................... ( -26.70)
>DroSec_CAF1 37655 95 - 1
AGGCUGGGGAUAGGACUACUGGCCACAAAUC--------CUGUGAGGCCCAGACAGACUGUUAAAAGGGCUAGAGGGCUUAACCAGCACAAA-------AAAAAAAAGAU
..(((((...((((.((.((((((.......--------((((.........)))).((......)))))))).)).)))).))))).....-------........... ( -25.90)
>DroSim_CAF1 40904 95 - 1
AGGCUGGGGAUAGGACUACUGGCCACAAAUC--------CUGUGAGGCCCAGACAGACUGUUAAAAGGGCUAGAGGGCUUAGCCAGCACAAA-------AAAAAGAAGAU
..(((((...((((.((.((((((.......--------((((.........)))).((......)))))))).)).)))).))))).....-------........... ( -25.90)
>DroYak_CAF1 41005 100 - 1
AGGCUGGGGAUAGGACUACUGGCCACAAAUCCUGCAAUCCUGUGAGGCCCAGACAGACGGCGAAAAGGGCUAGAGGGCUUAGCCAGCAAAAA-------AAAAAGAG---
..(((((...((((.((.((((((......(..(((....)))..)(((.........)))......)))))).)).)))).))))).....-------........--- ( -27.30)
>consensus
AGGCUGGGGAUAGGACUACUGGCCACAAAUC________CUGUGAGGCCCAGACAGACUGUUAAAAGGGCUAGAGGGCUUAGCCAGCACAAA_______AAAAAAAAGAU
..(((((...((((.((.((((((...............((((.........)))).((......)))))))).)).)))).)))))....................... (-24.55 = -24.80 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:51 2006