| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,560,926 – 8,561,029 |
| Length | 103 |
| Max. P | 0.876743 |
| Location | 8,560,926 – 8,561,029 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 92.07 |
| Mean single sequence MFE | -38.52 |
| Consensus MFE | -34.14 |
| Energy contribution | -33.98 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.876743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8560926 103 + 20766785 CUGUUCCAAGCAGCUGCC--------AUUGCUGUCGCUGCUGGUUUUCGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCCGCUGAUGGCUAGAU .........(((((....--------...))))).....(((((..((((((((((((((((((((((........))))))))).))).)))))..)))))..))))).. ( -35.60) >DroSec_CAF1 36667 103 + 1 CUGUUCCAAGCAGCUGCC--------AUUGCUGUCGCUGCUGGUUUUCGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCCGCUGACGGGAAAAG ...((((.((((((.((.--------......)).)))))).(((..(((.(((((((((((((((((........))))))))).))).))))))))..))).))))... ( -39.60) >DroSim_CAF1 39906 103 + 1 CUGUUCCAAGCAGCUGCC--------AUUGCUGUCGCUGCUGGUUUUCGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCCGCUGACGGGAAAAG ...((((.((((((.((.--------......)).)))))).(((..(((.(((((((((((((((((........))))))))).))).))))))))..))).))))... ( -39.60) >DroEre_CAF1 25402 100 + 1 CUGUUCCAAGCAGCUGCC--------ACUGCUGUCGCUGCUGGUUUUCGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCCGCUGACA---AAGG .....((.((((((.((.--------......)).)))))).(((..(((.(((((((((((((((((........))))))))).))).))))))))..))).---..)) ( -36.10) >DroYak_CAF1 39986 108 + 1 CUGUUCCAAGCAGCUGCCAUAGCUCCACUGCUGUCGCUGCUGGUUUUCGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCCGCUGACA---AAGG .....((...((((.((.(((((......))))).)).))))(((..(((.(((((((((((((((((........))))))))).))).))))))))..))).---..)) ( -41.70) >consensus CUGUUCCAAGCAGCUGCC________AUUGCUGUCGCUGCUGGUUUUCGGUCGACAUUUCCGGGCAGUCCGAAGUAAUUGCUCGGCAAGCUGUUGCCGCUGACGG__AAAG ........((((((.((...............)).)))))).(((..(((.(((((((((((((((((........))))))))).))).))))))))..)))........ (-34.14 = -33.98 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:50 2006