Locus 2353

Sequence ID 2R_DroMel_CAF1
Location 8,560,660 – 8,560,770
Length 110
Max. P 0.634785
window3887

overview

Window 7

Location 8,560,660 – 8,560,770
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -37.60
Consensus MFE -30.42
Energy contribution -31.18
Covariance contribution 0.76
Combinations/Pair 1.03
Mean z-score -1.44
Structure conservation index 0.81
SVM decision value 0.21
SVM RNA-class probability 0.634785
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8560660 110 - 20766785
UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGACAGGACACUGCCGGGGUG---------CACAGAUAAAAAUG-AA
.................(((((..((((..((((((..(((.(((((((.(((.((((......)))).)))))))))).))).))))))))))---------...)))))......-.. ( -38.90)
>DroSec_CAF1 36392 110 - 1
UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGAAAGGACACUGCCGGGGUG---------CACCGAUAAAAAUG-AA
.((((....((((((.(((..(.((((..(....)....)))).)..)))))))))((..(((((((.((.(((.......))))).)))))))---------..))........))-)) ( -34.90)
>DroSim_CAF1 39631 110 - 1
UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGACAGGACACUGCCGGGUUG---------CACCGAUAAAAAUG-AA
.........(((((..(((........)))((((((..(((.(((((((.(((.((((......)))).)))))))))).))).))))))))))---------).............-.. ( -39.40)
>DroEre_CAF1 25144 111 - 1
UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGAAAGGACACAGCCAGGGUG---------CACAGAUAAAAAAGCAA
.........((......(((((..((((....(((...((((((.((((.(((.((((......)))).)))))))...)))))))))..))))---------...))))).....)).. ( -31.10)
>DroYak_CAF1 39711 119 - 1
UUUCAAUUAGCAGCGAGUGUCUCACACCAGCUGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGACAGGACACAGCCAGGGUGACCCAGGUACACUGUUAAAAAUG-GA
......(((((((...((..((..((((..(((((...(((.(((((((.(((.((((......)))).)))))))))).)))..)))))))))....))..)).))))))).....-.. ( -43.70)
>consensus
UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGACAGGACACUGCCGGGGUG_________CACAGAUAAAAAUG_AA
.........((((...))))....((((..(((((...(((.(((((((.(((.((((......)))).)))))))))).)))..))))))))).......................... (-30.42 = -31.18 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:49 2006