Locus 2350

Sequence ID 2R_DroMel_CAF1
Location 8,558,119 – 8,558,239
Length 120
Max. P 0.686834
window3877

overview

Window 7

Location 8,558,119 – 8,558,239
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.75
Mean single sequence MFE -40.80
Consensus MFE -33.14
Energy contribution -34.22
Covariance contribution 1.08
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.81
SVM decision value 0.32
SVM RNA-class probability 0.686834
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8558119 120 + 20766785
AUCGAUUCGUCGAAGCGAGGCAUUGCUAUUGGUCGGAUUUGAAGGGCAAACGCGGUUGGCCGAAAACGGGACAAGCCGAAGAAUGCCGAAUGCUGCCGAUCGCUCUUUGAUUCAAUGAUU
((((((((((((((((((....))))).)))).))))))((((...((((.(((((((((......(((......)))......((.....)).)))))))))..)))).))))..))). ( -34.70)
>DroSec_CAF1 33792 120 + 1
AUCGAGUUGUCGAAGCGAGGCAUUGCGAUUGGUCGGAUUUGAAGGGCAAACGCGGUUGGCCGAAAUCGGGGCAAGCCGAAGAUAGCCGAAUGCUGCCGAUCGCUCUUUGAUUCAAUGAUU
....(((..(.(((.(((((....(((((((((.(.((((....(((.....(((((.(((........))).)))))......))))))).).))))))))).))))).))).)..))) ( -40.30)
>DroSim_CAF1 37096 120 + 1
AUCGAGUCGUCGAAGCGAGGCAUUGCGAUUGGUCGGAUUUGAAGGGCAAACGCGGUUGGCCGAAAACGGGGCAAGCCGAAGAUAGCCGAAUGCUGCCGAUCGCUCUUUGAUUCAAUGAUU
....((((((.(((.(((((....(((((((((.(.((((....(((.....(((((.(((........))).)))))......))))))).).))))))))).))))).))).)))))) ( -43.00)
>DroEre_CAF1 22518 120 + 1
AUGCAGUCGUUUGAGCGAAGCAAUGCGAUUGGUCGGAUUUAAAGGGCAAACGCAAUUGGCGGAAACAGAGGCAAGCCGAAGAUAGCCGAAUGCAGCCGAGCGCUCUUUGAUUCAACGAUU
...((((((((((.......))).)))))))((((((.(((((((((....(((.((((((....)...((....)).......))))).))).((...))))))))))).))..)))). ( -39.20)
>DroYak_CAF1 36828 120 + 1
AUCGAGUCGUUGGAGCGAAGCAAUGCGAUUGGUCGGAUUUGAGGGGCGAACCCGAUUGGCGGAAAACGAGGCGAGCCGAAGUUAGCCGAGUGCAGCCGAUCGCAAUUCGAUUCAAUGAUU
....((((((((((.((((....((((((((((.(.((((..(((.....)))....(((....(((..((....))...))).))))))).).)))))))))).)))).)))))))))) ( -46.80)
>consensus
AUCGAGUCGUCGAAGCGAGGCAUUGCGAUUGGUCGGAUUUGAAGGGCAAACGCGGUUGGCCGAAAACGGGGCAAGCCGAAGAUAGCCGAAUGCUGCCGAUCGCUCUUUGAUUCAAUGAUU
....((((((.(((.(((((....(((((((((.(.((((....(((.....(((((.(((........))).)))))......))))))).).))))))))).))))).))).)))))) (-33.14 = -34.22 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:39 2006