| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,556,617 – 8,556,728 |
| Length | 111 |
| Max. P | 0.852568 |
| Location | 8,556,617 – 8,556,728 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.69 |
| Mean single sequence MFE | -35.62 |
| Consensus MFE | -25.10 |
| Energy contribution | -25.60 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8556617 111 + 20766785 ACAGAUUGACAGCCAACGAGCAUAAACCCUUAAAAUGGAGACUGGA---------GGAGCGAAGUGAGUGUCGCAAAAAGUCGGGAGGCGGAUGACAUGCCUCGGAAAGCUGUCAAGAAC .....((((((((...(((........((((.....(....)..))---------)).((((........))))......))).((((((.......)))))).....)))))))).... ( -34.10) >DroSec_CAF1 32239 111 + 1 ACAGAUUGACAGCCAACGAGCAUAAACCCUUAAAAUGGAGACUGGA---------GGAGCGAAGUGAGUGUCGCAAAAAGUCGGGAGGCGGAUGACAUGCCUCGGAAAGCUGUCAAGAAC .....((((((((...(((........((((.....(....)..))---------)).((((........))))......))).((((((.......)))))).....)))))))).... ( -34.10) >DroEre_CAF1 21199 110 + 1 ACAGAUUGACAGCCAACGAGCAUAAACC-UCAAAAUGGUGACUGGA---------GGAGCGAGGGGAGUGGCGCAAGAAGUCGGGAGGCGGAUGACAUGCCCCGGAAAGCUGUCAGUUAC ...((((((((((.............((-((.....(....)..))---------)).....((((.(((.(....)..(((....)))......))).)))).....)))))))))).. ( -38.10) >DroYak_CAF1 35478 119 + 1 UCAGAUUGACAGCCAACGAGCAUAAACC-CCAAAAUGAGGGCUGCAGGGGGUUAAGGGGCGAGCGGAGUGGCGCAAGAAGUCGGGAGGCGGAUGACAUGCAUCGCAAAGCUGUCAGAUAC .....((((((((((.((.((.(.((((-((....((.......)).)))))).)...))...))...))))((.....(((....))).((((.....)))))).....)))))).... ( -36.20) >consensus ACAGAUUGACAGCCAACGAGCAUAAACC_UCAAAAUGGAGACUGGA_________GGAGCGAAGGGAGUGGCGCAAAAAGUCGGGAGGCGGAUGACAUGCCUCGGAAAGCUGUCAAGAAC .....((((((((...(((((((...................................((((........)))).....(((....))).......)))).)))....)))))))).... (-25.10 = -25.60 + 0.50)
| Location | 8,556,617 – 8,556,728 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.69 |
| Mean single sequence MFE | -30.58 |
| Consensus MFE | -23.36 |
| Energy contribution | -24.43 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8556617 111 - 20766785 GUUCUUGACAGCUUUCCGAGGCAUGUCAUCCGCCUCCCGACUUUUUGCGACACUCACUUCGCUCC---------UCCAGUCUCCAUUUUAAGGGUUUAUGCUCGUUGGCUGUCAAUCUGU ....(((((((((...((((.((((..((((.......((((....((((........))))...---------...))))..........)))).))))))))..)))))))))..... ( -31.43) >DroSec_CAF1 32239 111 - 1 GUUCUUGACAGCUUUCCGAGGCAUGUCAUCCGCCUCCCGACUUUUUGCGACACUCACUUCGCUCC---------UCCAGUCUCCAUUUUAAGGGUUUAUGCUCGUUGGCUGUCAAUCUGU ....(((((((((...((((.((((..((((.......((((....((((........))))...---------...))))..........)))).))))))))..)))))))))..... ( -31.43) >DroEre_CAF1 21199 110 - 1 GUAACUGACAGCUUUCCGGGGCAUGUCAUCCGCCUCCCGACUUCUUGCGCCACUCCCCUCGCUCC---------UCCAGUCACCAUUUUGA-GGUUUAUGCUCGUUGGCUGUCAAUCUGU .....((((((((..(..(((((((......(((((..((((....(((..........)))...---------...))))........))-))).))))))))..))))))))...... ( -27.30) >DroYak_CAF1 35478 119 - 1 GUAUCUGACAGCUUUGCGAUGCAUGUCAUCCGCCUCCCGACUUCUUGCGCCACUCCGCUCGCCCCUUAACCCCCUGCAGCCCUCAUUUUGG-GGUUUAUGCUCGUUGGCUGUCAAUCUGA .....((((((((..((((.(((((.....................(((......)))..(((((........................))-))).))))))))).))))))))...... ( -32.16) >consensus GUACCUGACAGCUUUCCGAGGCAUGUCAUCCGCCUCCCGACUUCUUGCGACACUCACCUCGCUCC_________UCCAGUCUCCAUUUUAA_GGUUUAUGCUCGUUGGCUGUCAAUCUGU .....(((((((.....(((((.........))))).((((.....((((........)))).............................((((....)))))))))))))))...... (-23.36 = -24.43 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:35 2006