| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,554,038 – 8,554,138 |
| Length | 100 |
| Max. P | 0.984703 |
| Location | 8,554,038 – 8,554,138 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.35 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -12.98 |
| Energy contribution | -13.30 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8554038 100 - 20766785 AAUGCCAAAAACUGUGC------AGAUACAGAUGUUGUAAAUUAGAACUGCACACAUUCAAAAGUUUGCCCUUAAACUUUUCAUGACAAUAUAAACUAGGCAACAA-------------- ..((((......(((((------((...(.(((.......))).)..)))))))(((..(((((((((....))))))))).))).............))))....-------------- ( -21.10) >DroSec_CAF1 29659 99 - 1 AAUGCCAAAAACUGUGC------AGAUACAGAUGUCGUAAAUUAGAACUGCACACAUUCAAAAGUUUGCCCUUAAACUUUUCAUGACAAU-UAAACAAGGCAACAA-------------- ..((((......(((((------((...(.(((.......))).)..)))))))(((..(((((((((....))))))))).))).....-.......))))....-------------- ( -21.10) >DroSim_CAF1 33239 99 - 1 AAUGCCAAAAACUGUGC------AGAUACAGAUGUCGUAAAUUAGAACUGCACACAUUCAAAAGUUUGCCCUUAAACUUUUCAUGACAAU-UAAACAAGGCAACAA-------------- ..((((......(((((------((...(.(((.......))).)..)))))))(((..(((((((((....))))))))).))).....-.......))))....-------------- ( -21.10) >DroEre_CAF1 18532 113 - 1 AAUGCCAAAAACUCUGC------AGAUACAGAUGUCGUAAAUUAAAACUGCACACAUUCAAAAGUUUUGCCUUCUACUUUUGAUAACAAU-AAAACAAGGCAACAACUGCCAGAUAAAUA ..((((........(((------((.....(((.......)))....))))).....((((((((..........)))))))).......-.......)))).................. ( -16.90) >DroYak_CAF1 32865 119 - 1 AAUGCUAAAAAGUGUGCAGACGCAGAUACAGAUGUCGUAAAUUAAAACUGCACACACUCAAAAGUUUUUCCUUCAACUUUUGAUGACAAU-GAAACAAAGCAUUAACGGCAAGAAAAAUA ((((((.....(((((((((((((........)).))).........))))))))..(((((((((........))))))))).......-.......))))))................ ( -27.40) >consensus AAUGCCAAAAACUGUGC______AGAUACAGAUGUCGUAAAUUAGAACUGCACACAUUCAAAAGUUUGCCCUUAAACUUUUCAUGACAAU_UAAACAAGGCAACAA______________ ..((((......(((((.......((((....))))((........)).))))).....((((((((......)))))))).................)))).................. (-12.98 = -13.30 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:28 2006