Locus 2338

Sequence ID 2R_DroMel_CAF1
Location 8,548,663 – 8,548,774
Length 111
Max. P 0.537215
window3855

overview

Window 5

Location 8,548,663 – 8,548,774
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.20
Mean single sequence MFE -25.10
Consensus MFE -14.96
Energy contribution -17.20
Covariance contribution 2.24
Combinations/Pair 1.04
Mean z-score -1.91
Structure conservation index 0.60
SVM decision value 0.01
SVM RNA-class probability 0.537215
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8548663 111 - 20766785
CGGAAUGCGACCCUCUCGUUGGGUGGCUCUACACUCGAAGUGAAUAAAUUACUUAUAGAUCUAGUUGAUCUUAUAAUAUCAGCUG---CCCAACUAAUCUUAUAUAAUG------CCUUA
.((........))....((((((..(((...(((.....)))..........(((((((((.....)))).)))))....)))..---))))))...............------..... ( -26.60)
>DroSec_CAF1 24190 113 - 1
CGGAAUGCGACCCUCUCGUUGGGUUGUUCU-----CCAAGUGAAUAAAUUACUUAUAGAUCUAGUUGAUCUUAUAAUAUCAGCUGG--CCCAACUAAUCUUAUAUAAUGCCCCUGCCUUA
.(((..(((((((.......)))))))..)-----))((((((.....))))))...(..(((((((((........)))))))))--..)............................. ( -27.90)
>DroSim_CAF1 27829 113 - 1
CGGAAUGCGACCCUCUCGUUGGGUUGUUCU-----CCAAGUGAAUAAUUUACUUAUAGAUCUAGUUGAUCUUAUAAUAUCAGCUGG--CCCAACUAAUCUUAUAUAAUGCCCAUGCCCUA
.(((..(((((((.......)))))))..)-----))((((((.....))))))...(..(((((((((........)))))))))--..)............................. ( -27.90)
>DroEre_CAF1 13364 109 - 1
CGGAAUGCGACCCUCUCGUUGGGUUGCGCU-----CAAAGUGAAUAAAUUACUUCAAGAUCUAGUUGAUCUUAUACUAUCAGCUUG---CCAACUAAUCUUAUAUAAUGCC---GCCUUA
(((...(((((((.......)))))))(((-----..((((((.....)))))).((((((.....))))))........)))...---....................))---)..... ( -25.70)
>DroYak_CAF1 27465 99 - 1
CGGAAUGCGAGCCCCUCA------------------AAAGUGAAUAAAUUACUUAAAGAUCUAGUUGAUCGUAUACUAUCAGCUUCGUCGCAACUAAUCUUAUAUAAUGUC---GCCUUA
......((((........------------------.((((((.....))))))...(((..(((((((.(....).)))))))..)))....................))---)).... ( -17.40)
>consensus
CGGAAUGCGACCCUCUCGUUGGGUUGCUCU_____CAAAGUGAAUAAAUUACUUAUAGAUCUAGUUGAUCUUAUAAUAUCAGCUGG__CCCAACUAAUCUUAUAUAAUGCC___GCCUUA
.((...(((((((.......)))))))..........((((((.....))))))......(((((((((........))))))))).............................))... (-14.96 = -17.20 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:18 2006