Locus 2336

Sequence ID 2R_DroMel_CAF1
Location 8,548,134 – 8,548,226
Length 92
Max. P 0.569216
window3853

overview

Window 3

Location 8,548,134 – 8,548,226
Length 92
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.46
Mean single sequence MFE -20.82
Consensus MFE -17.50
Energy contribution -17.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.84
SVM decision value 0.07
SVM RNA-class probability 0.569216
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8548134 92 + 20766785
UCUCUUC----------------------------UCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA
.......----------------------------......(((.....)))..................(((((.((((((.(((((....))))).).)))))...)))))....... ( -17.50)
>DroSec_CAF1 23684 92 + 1
UCUCUUC----------------------------UCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA
.......----------------------------......(((.....)))..................(((((.((((((.(((((....))))).).)))))...)))))....... ( -17.50)
>DroSim_CAF1 27320 92 + 1
UCUCUUC----------------------------UCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA
.......----------------------------......(((.....)))..................(((((.((((((.(((((....))))).).)))))...)))))....... ( -17.50)
>DroEre_CAF1 12830 95 + 1
UCGCCUC-------------------------CUCUUAACUGGCAACUGGCCGCAUAAAUUUGCUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA
..(((..-------------------------.........)))....(((((((......))).....(((..(.((.....(((((....))))).)))..)))....))))...... ( -24.40)
>DroYak_CAF1 26936 120 + 1
UCUCCUCUCAACUGCCAACUGCCGACUGCCGACUUCCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA
....................(((((..(((((.........(((.....))).............((((((.(((.(((......))).))).)))))).)))))...)))))....... ( -27.20)
>consensus
UCUCUUC____________________________UCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA
.........................................(((.....)))..................(((((.((((((.(((((....))))).).)))))...)))))....... (-17.50 = -17.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:16 2006