Locus 2333

Sequence ID 2R_DroMel_CAF1
Location 8,544,051 – 8,544,143
Length 92
Max. P 0.992595
window3849

overview

Window 9

Location 8,544,051 – 8,544,143
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 91.18
Mean single sequence MFE -19.36
Consensus MFE -19.30
Energy contribution -18.86
Covariance contribution -0.44
Combinations/Pair 1.11
Mean z-score -2.53
Structure conservation index 1.00
SVM decision value 2.34
SVM RNA-class probability 0.992595
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8544051 92 + 20766785
UCGAGUGUGUGUUUCUGCUCAGCCCACUUUUGGAGCACCCACCCACACACACACACACACAACGACCUCGUCACACUCGACACGCCAAUUCC
((((((((((((...((....(((((....))).))...))...)))))))).........(((....))).....))))............ ( -19.90)
>DroSec_CAF1 19656 84 + 1
UUGAGUGUGUGCUUCUGCUCAGCCCACUUUUGGAGCACC----CAC----ACACACAUACUACGACCUCGUCACACUCGACACGCCAAUUCC
....(((((((....(((((............)))))..----..)----)))))).............(((......)))........... ( -19.20)
>DroSim_CAF1 23275 88 + 1
UUGAGUGUGUGCUUCUGCUCAGCCCACUUUUGGAGCACCCACCCAC----ACACACACACAACGACCUCGUCACACUCGACACGCCAAUUCC
(((((((((((((((................)))))))........----...........(((....))).))))))))............ ( -18.99)
>consensus
UUGAGUGUGUGCUUCUGCUCAGCCCACUUUUGGAGCACCCACCCAC____ACACACACACAACGACCUCGUCACACUCGACACGCCAAUUCC
(((((((((((((((................))))))).......................(((....))).))))))))............ (-19.30 = -18.86 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:12 2006