Locus 2325

Sequence ID 2R_DroMel_CAF1
Location 8,531,666 – 8,531,786
Length 120
Max. P 0.879733
window3829

overview

Window 9

Location 8,531,666 – 8,531,786
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.12
Mean single sequence MFE -46.68
Consensus MFE -40.22
Energy contribution -41.23
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.86
SVM decision value 0.91
SVM RNA-class probability 0.879733
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8531666 120 + 20766785
UACCCCAAGAGAGAGCCCGCUCUCCUUGGCAAUUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGAUGGGUAGGUGGGUGGUGGGCGACGGUGG
....(((...(...((((((((((((((.(.....(((((((...((((((..((.((((((.....)))))).))..)))))).)))))))..).)))).))).)))))))..)..))) ( -47.20)
>DroSec_CAF1 7112 118 + 1
UACCCCAAGA--GAGCCCGCUCUCCUUGGCAAUUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGUUGGGUAGGUGGGUGGUGGGCGGCGCUGC
..........--.(((((((((.((((.((..((..((((((...((((((..((.((((((.....)))))).))..)))))).))))))..))....)).)).)).)))))).))).. ( -44.50)
>DroSim_CAF1 10453 118 + 1
UACCCCAAGA--GAGCCCGCUCUGCUUGGCAAUUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGCUGGGUAGGUGGGUGGUGGGCGGCGGUGG
..(((((...--..((((((.(((((..((.......(((((...((((((..((.((((((.....)))))).))..)))))).)))))))..)))))))))))..)))).)....... ( -49.21)
>DroYak_CAF1 10230 114 + 1
UACCCCAAGA--GAGCCCGCUCUCCUUGGCAAAUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGAUGGGUAGG----UGGUGGGCGAUGGUGG
..(((((...--..(((((((..(((..((.....(((((((...((((((..((.((((((.....)))))).))..)))))).)))))))...)))))----.)))))))..))).)) ( -45.80)
>consensus
UACCCCAAGA__GAGCCCGCUCUCCUUGGCAAUUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGAUGGGUAGGUGGGUGGUGGGCGACGGUGG
....(((.......((((((((..((((.(.....(((((((...((((((..((.((((((.....)))))).))..)))))).)))))))..).))))..)..))))))).....))) (-40.22 = -41.23 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:53 2006