Locus 2324

Sequence ID 2R_DroMel_CAF1
Location 8,531,509 – 8,531,628
Length 119
Max. P 0.947273
window3828

overview

Window 8

Location 8,531,509 – 8,531,628
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.68
Mean single sequence MFE -38.83
Consensus MFE -30.39
Energy contribution -31.95
Covariance contribution 1.56
Combinations/Pair 1.11
Mean z-score -2.87
Structure conservation index 0.78
SVM decision value 1.37
SVM RNA-class probability 0.947273
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8531509 119 - 20766785
GAAAGAGAGCAAUGGGGCCAAGAAAGUAGGCAAGGGGGUGGUGGAGGUGGGCAGGG-GAUGGCAAAAGCGGAGAGAGAAACAAUUUUACUGCUAGCAUUGCCACGUUUAUGCGUCUCCAA
................(((.........)))..((((..((((((.((((.(((..-....((...(((((.((((.......)))).))))).)).))))))).))))).)..)))).. ( -30.60)
>DroSec_CAF1 6954 120 - 1
GAAAGAGAGCAAUGGGGCCAAGAAAGUAGGCAAGGGGGUGGUGGUGUUGAGCAGGGGGCUGGCAACAGCGGAGAGAGAAACAAUUUUACUGCUAGCAUUGCCACGUUUAUGCGUCUCCAA
....(((((((.....(((.........)))..(((.((((..(((((.(((((...((((....))))...((((.......)))).))))))))))..)))).))).))).))))... ( -43.70)
>DroSim_CAF1 10295 120 - 1
GAAAGAGAGCAAUGGGGCCAAGAAAGUGGGCAAGGGGGUGGUGGUGUUGAGCAGGGGGCUGGCAACAGCGGAGAGAGAAACAAUUUUACUGCUAGCAUUGCCACGUUUAUGCGUCUCCAA
............((((((((......)))(((..((.((((..(((((.(((((...((((....))))...((((.......)))).))))))))))..)))).))..)))..))))). ( -45.00)
>DroYak_CAF1 10071 119 - 1
GAAAGAGAGCAAUGAGGUUAAGAAAGUUGACAAGGGGGUGGUGGAAGAGAGCGGGU-GGUGGCAGCAGCGGAGAGAGAAACAGUUUUGCUGCUAGCAUUGCCACGUUUAUGCGUCCCCGA
................(((((.....)))))...((((..(((.....(((((((.-.(((..((((((((((..........))))))))))..)))..)).))))).)))..)))).. ( -36.00)
>consensus
GAAAGAGAGCAAUGGGGCCAAGAAAGUAGGCAAGGGGGUGGUGGAGGUGAGCAGGG_GCUGGCAACAGCGGAGAGAGAAACAAUUUUACUGCUAGCAUUGCCACGUUUAUGCGUCUCCAA
....(((((((.....(((.........)))..(((.((((..(((((.(((((...((((....))))...((((.......)))).))))))))))..)))).))).))).))))... (-30.39 = -31.95 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:52 2006