Locus 2323

Sequence ID 2R_DroMel_CAF1
Location 8,530,529 – 8,530,643
Length 114
Max. P 0.660057
window3827

overview

Window 7

Location 8,530,529 – 8,530,643
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.32
Mean single sequence MFE -25.08
Consensus MFE -20.64
Energy contribution -20.95
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.73
Structure conservation index 0.82
SVM decision value 0.27
SVM RNA-class probability 0.660057
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8530529 114 - 20766785
ACAAAAAAAAGAGCAGAAGCAUAAACAAGAGACAGCAGCAGCA------ACAACACUAACGAAAUGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUUUAAAAUUGCUGUCAGCCA
...(((((..((((((..((((............((....)).------......(....)..))))......))))))..)))))(((..(.((.(((((.....))))).))).))). ( -25.70)
>DroSec_CAF1 6045 112 - 1
A--AAAAAAAGAGCAGAAGCAUAAACAAGAGACAGCAGCAACA------ACAACACUAACGAAAGGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUUUAAAAUUGCUGUCAGCCA
.--.........((....))..........((((((((.....------..........(....)((.((..((.((.(((....))).)))).)))).........))))))))..... ( -24.70)
>DroSim_CAF1 9300 115 - 1
A--AAAAAAAGAGCAGAAGCAUAAACAAGAGACAGCAGCAACA---ACAACAACACUAACGAAAGGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUCUAAAAUUGGUGUCAGCCA
.--.........((((..((.....((((((..((((((....---.............(....)(.....)))))))...))))))..))...))))..........((((....)))) ( -22.80)
>DroYak_CAF1 9030 119 - 1
AC-AAAAAAAGAGCAGAAGCAUAAACAAGAGACAGUAGCAACAGCAGCAACAACACCAACGAAAGGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUUUAAAAUUGCUGUCAGCCA
..-(((((..((((((..((..............((.((....)).))...........(....)))......))))))..)))))(((..(.((.(((((.....))))).))).))). ( -27.10)
>consensus
A__AAAAAAAGAGCAGAAGCAUAAACAAGAGACAGCAGCAACA______ACAACACUAACGAAAGGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUUUAAAAUUGCUGUCAGCCA
............((....))..........((((((((.....................(....)((.((..((.((.(((....))).)))).)))).........))))))))..... (-20.64 = -20.95 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:51 2006