Locus 232

Sequence ID 2R_DroMel_CAF1
Location 1,578,110 – 1,578,207
Length 97
Max. P 0.617193
window509

overview

Window 9

Location 1,578,110 – 1,578,207
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 87.81
Mean single sequence MFE -17.22
Consensus MFE -15.56
Energy contribution -15.90
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.90
SVM decision value 0.17
SVM RNA-class probability 0.617193
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1578110 97 - 20766785
AACGCCAGUUUGGGUCCUUUAUUAAAUCCCAAAAAAGUACAGACCAUAAAACAACUAACUUGCUGGCCUACAAACGACCACUGGUCAGAAUCCAAAU
...(((((((((((.............)))))..((((...................))))))))))........((((...))))........... ( -17.73)
>DroSec_CAF1 17145 85 - 1
AACGCCAGUUUGGGUCCCUUAUUAAAUCCCAAGAAAGUACAGAC------------AACUUGCUGGCCCACAAACGACCAGUGCUCAGAAUCCAAAU
...(((((((((((.............)))))..((((......------------.)))))))))).(((.........))).............. ( -14.92)
>DroSim_CAF1 13410 85 - 1
AACGCCAGUUUGGGUCCCUUAUUAAAUCCCAAGAAAGUACAGAC------------AACUUGCUGGCCCACAAACGACCAGUGGUCAGAAUCCAAAU
...(((((((((((.............)))))..((((......------------.))))))))))........((((...))))........... ( -19.02)
>consensus
AACGCCAGUUUGGGUCCCUUAUUAAAUCCCAAGAAAGUACAGAC____________AACUUGCUGGCCCACAAACGACCAGUGGUCAGAAUCCAAAU
...(((((((((((.............)))))..((((...................))))))))))........((((...))))........... (-15.56 = -15.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:06 2006