Locus 2319

Sequence ID 2R_DroMel_CAF1
Location 8,526,088 – 8,526,207
Length 119
Max. P 0.977217
window3818

overview

Window 8

Location 8,526,088 – 8,526,207
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.63
Mean single sequence MFE -29.88
Consensus MFE -27.12
Energy contribution -27.75
Covariance contribution 0.62
Combinations/Pair 1.03
Mean z-score -2.24
Structure conservation index 0.91
SVM decision value 1.79
SVM RNA-class probability 0.977217
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8526088 119 + 20766785
ACUCAAAUGUCUAUCGCCUGUGG-CACACAAUCUGCCUGAUAAGUACCUGAAAAUGUUAAUACCCAAAGGUGUUGACGAAUUUCGCGGUAGACGGCUAAUGCCCAAAACUAUUCCUUUGU
...((((.(((((((((....((-((.......))))............((((.((((((((((....))))))))))..)))))))))))))(((....)))............)))). ( -35.70)
>DroSec_CAF1 1611 119 + 1
AAUCAAAUGUCUAUCGCCAUUGA-UACACAAUUUGCCUGAUAAGUAACUGAAAAUGUUAAUACCCAAAGGUGUUGACGAAUUUCGCGGUAGACGGCUAAUGCCCAACACUAUUUCUUUGU
...((((.(((((((((......-........((((.......))))..((((.((((((((((....))))))))))..)))))))))))))(((....)))............)))). ( -31.10)
>DroSim_CAF1 4763 119 + 1
AAUCAAAUGUCUAUCGCCAGUGA-CACACAAUCUGCCUGAUAAGUAACUGAAAAUGUUAAUACCCAAAGGUGUUGACGAAUUUCGCGGUAAACGGCUAAUGCCCAACACUAUUUCUUUGU
...((((.((.((((((((((..-.((...(((.....)))..)).))))....((((((((((....))))))))))......)))))).))(((....)))............)))). ( -27.70)
>DroYak_CAF1 4481 120 + 1
AAUCAAAUGUCUAUCGCCAGUGAACACACAAUCUUACUGAUAAGUACCUUAAAAUGUUAAUGCCCAAAGUCGUUGACGAAUGUCGCGGCAGACGGCUAAUGCCCAAAACUAUUCCUUUGU
...((((.((((..(((((((((..........))))))...............(((((((((.....).))))))))......)))..))))(((....)))............)))). ( -25.00)
>consensus
AAUCAAAUGUCUAUCGCCAGUGA_CACACAAUCUGCCUGAUAAGUAACUGAAAAUGUUAAUACCCAAAGGUGUUGACGAAUUUCGCGGUAGACGGCUAAUGCCCAAAACUAUUCCUUUGU
...((((.(((((((((..(((....))).........................((((((((((....))))))))))......)))))))))(((....)))............)))). (-27.12 = -27.75 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:43 2006