| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,525,210 – 8,525,316 |
| Length | 106 |
| Max. P | 0.884348 |
| Location | 8,525,210 – 8,525,316 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.88 |
| Mean single sequence MFE | -25.31 |
| Consensus MFE | -17.30 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8525210 106 - 20766785 UUCAGCCGACGCAGGCAGUGGCAAUAGCAACA--------------ACAGCAAUAGCAACAAAUACAAUGUAAAGCUGAUAAGUCUGUUUUCGCAAACGACGGCGAAAAGUCAAAAGUCC .......(((((((((.((.((....)).)).--------------.((((....(((..........)))...))))....))))))((((((........)))))).)))........ ( -24.60) >DroSec_CAF1 692 88 - 1 UUCAGCCGACGCAGGCAGUGGCA--------------------------------GCAACAAAUACAUCGUAACGCUGAUAAGUCUGUUUUCGCCAACGACGGCGAAAAGUCAAAAGUCC .......(((((((((.....((--------------------------------((.................))))....))))))(((((((......))))))).)))........ ( -24.63) >DroYak_CAF1 3540 120 - 1 UUCAGCCGAAGCAGGCAGUGGCAAUGGCAACAGUAAAAGCAAAAGCAAAGCAAAAGCAACAAAUACACUCUAAAGCUGAUAAGUCUGUUUUCGCAAACGACGGCGAAAAGUCAAAAGUCC (((.((((((((((((..((((..((....))(((...((....))...((....))......)))........))))....))))))))(((....))))))))))............. ( -26.70) >consensus UUCAGCCGACGCAGGCAGUGGCAAU_GCAACA______________A_AGCAA_AGCAACAAAUACAAUGUAAAGCUGAUAAGUCUGUUUUCGCAAACGACGGCGAAAAGUCAAAAGUCC ....(((......)))..((((....................................................(((....)))...(((((((........)))))))))))....... (-17.30 = -17.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:42 2006