| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,523,961 – 8,524,065 |
| Length | 104 |
| Max. P | 0.789501 |
| Location | 8,523,961 – 8,524,065 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.59 |
| Mean single sequence MFE | -32.00 |
| Consensus MFE | -28.57 |
| Energy contribution | -28.90 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8523961 104 + 20766785 UCA---U-------------UCCAUUCUUGGCCUUGGGGUCCACAAAUCACCGAUGCCUUGGCAACCCCGCUUGGCCAGCAGUUUACUUGUUGGCAUUGCGGAUUUCAACGCUUUUCAUG ...---.-------------..(((....(((.(((..((((............(((....))).....((...((((((((.....))))))))...))))))..))).)))....))) ( -33.80) >DroSim_CAF1 2315 107 + 1 UCCUGCU-------------UCCAUUCUCGGCCUUGGGGUCCACAAAUCACCGAUGCCUUGCCAACCCCGCUUGGCCAGCAGUUUACUUGUUGGCAUUGCGGAUUUCAACGCUUUUCAUG ....((.-------------.........(((.(((((((......))).)))).))).........((((...((((((((.....))))))))...))))........))........ ( -31.40) >DroYak_CAF1 2296 120 + 1 UCCGCCAUCCUCGUGAGUUCCCCAUCCUCGGCCUUGGGGUCCACAAAUCACCGAUGCCUUGCCAACCCCGCUUGGCCCGCAGUUUACUUGUUGGCACUGCGGAUUUCAACGCUUUUCAUG ...((((((...(((((..(((((..........)))))..).....)))).))))....(((((......)))))(((((((...(.....)..)))))))........))........ ( -30.80) >consensus UCC__CU_____________UCCAUUCUCGGCCUUGGGGUCCACAAAUCACCGAUGCCUUGCCAACCCCGCUUGGCCAGCAGUUUACUUGUUGGCAUUGCGGAUUUCAACGCUUUUCAUG .............................(((.(((((((......))).)))).))).........((((...((((((((.....))))))))...)))).................. (-28.57 = -28.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:41 2006