Locus 2314

Sequence ID 2R_DroMel_CAF1
Location 8,518,378 – 8,518,470
Length 92
Max. P 0.913277
window3811

overview

Window 1

Location 8,518,378 – 8,518,470
Length 92
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 68.67
Mean single sequence MFE -36.83
Consensus MFE -21.35
Energy contribution -22.13
Covariance contribution 0.79
Combinations/Pair 1.20
Mean z-score -1.61
Structure conservation index 0.58
SVM decision value 1.09
SVM RNA-class probability 0.913277
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8518378 92 + 20766785
CCCAGUUCGAUUGCCAGUGCGGCUAACAAGAUGCCAAAGCGAUCCAUGUCCCUGGACGAAUCGCA---------UCCGGCCAAGCAGGCGAGAUUGAGCCA-------------------
....(((((((((((.((..((((.....(((((.....((.((((......))))))....)))---------)).))))..)).)))..))))))))..------------------- ( -29.90)
>DroMoj_CAF1 4179 120 + 1
CCCAGCUCCAUUGCCAGCGCGGCCAACAAGCAGCCGAAGCGCGCCUUGUCGCUGGACGAGAGUCAGCAGCAAUUGCUGGCCAAGCAGCCGCGCCUGGACUACCAGCAACAGCAGCAACAG
....((((..((((..(((((((......((.((....))))((((((((....)))))).((((((((...))))))))...)).))))))).(((....)))))))..).)))..... ( -44.50)
>DroYak_CAF1 3043 92 + 1
CCCAGCUCGAUUGCCAGUGCGGCCAACAAGAUGCCAAAGCGAUCCAUGUCCCUGGACGAAUCGCA---------UCCGGCCAAGCAGGCGCGAUUGAGCCA-------------------
....(((((((((((..(((((((.....(((((.....((.((((......))))))....)))---------)).))))..))).).))))))))))..------------------- ( -36.10)
>consensus
CCCAGCUCGAUUGCCAGUGCGGCCAACAAGAUGCCAAAGCGAUCCAUGUCCCUGGACGAAUCGCA_________UCCGGCCAAGCAGGCGCGAUUGAGCCA___________________
....((((((((((..((..((((.....(((((....)).)))..((((....))))...................))))..))....))))))))))..................... (-21.35 = -22.13 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:36 2006