Locus 2313

Sequence ID 2R_DroMel_CAF1
Location 8,509,238 – 8,509,328
Length 90
Max. P 0.875880
window3810

overview

Window 0

Location 8,509,238 – 8,509,328
Length 90
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 74.91
Mean single sequence MFE -25.28
Consensus MFE -11.01
Energy contribution -11.45
Covariance contribution 0.44
Combinations/Pair 1.16
Mean z-score -2.02
Structure conservation index 0.44
SVM decision value 0.89
SVM RNA-class probability 0.875880
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8509238 90 + 20766785
UAGAGGGGUCAAGCAGUGUCAAACGGACUUAAA-AAGGUCGGAAACGCUUAAUUUAUUUCAUACACA----------------------------UUGUCACAAUGUGUAGAAUAAAGC
..........((((...........(((((...-.)))))(....)))))..(((((((..((((((----------------------------(((...)))))))))))))))).. ( -21.50)
>DroSec_CAF1 21819 90 + 1
UAGAGUGGUCAAGCAGUGUCAAACGGACUUAAA-AAGGUCGGAAACGCUUAAUUUAUUUCAUACACA----------------------------UUGUCACAAUGUGUAGAAUAAAGC
..........((((...........(((((...-.)))))(....)))))..(((((((..((((((----------------------------(((...)))))))))))))))).. ( -21.50)
>DroSim_CAF1 22542 90 + 1
UAGAGGGGUCAAGCAGUGUCAAACGGACUUAAA-AAGGUCGGAAACGCUUAAUUUAUUUCAUACACA----------------------------UUGUCACAAUGUGUAGAAUAAAGC
..........((((...........(((((...-.)))))(....)))))..(((((((..((((((----------------------------(((...)))))))))))))))).. ( -21.50)
>DroEre_CAF1 21315 119 + 1
UAGAGGGGUCAAGCAGUGUCAAACGGACUUAAAAAAGGUCGGAAACGACUAAUUUAUUUCGAACGCAGAACUCAUAGCUGUUGACCUCUUUAAAUUUGUCUGUAUGUGUAGUGUAAGCU
((((((((((((.(((((((.....)))........(((((....)))))..........................))))))))))))))))........................... ( -32.10)
>DroYak_CAF1 23386 117 + 1
UGGAGGGGUCAAACAGUGUCAAACGGAAUUAAA-AAGGUCGGAAACGCCUAAUUUAUUUCAUUCGCAGAACUCAUACCUGUUGACCUCUUUAAAAUUAUCCAAAUGUGC-GAGUAAGCU
((((((((((((.(((.((.....(((((....-.(((.((....))))).....))))).......(....)..)))))))))))))))))...............((-......)). ( -29.80)
>consensus
UAGAGGGGUCAAGCAGUGUCAAACGGACUUAAA_AAGGUCGGAAACGCUUAAUUUAUUUCAUACACA____________________________UUGUCACAAUGUGUAGAAUAAAGC
.....(((((.....((.....)).))))).....(((.((....)))))..(((((((..((((((.....................................))))))))))))).. (-11.01 = -11.45 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:35 2006